RNA id: TCONS_00064820


Basic Information

Item Value
RNA id TCONS_00064820
length 1040
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_031915
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13260082 ~ 13267143 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGGCTCTGGCGTTACCTAGCAACGGCTCCCATACTGTACTCCCGCTCCAAGTGCCTGCCTGGCTGCCTTCAACTCTGGCGCTGTTTCTATTTCTGTTGTAGCGTTGCAGTCGCCGTCTGCTAAAACATTCATAGCACAGTCCTCTTAGCATGTGCCTTCTGCGGTAATGTTTCAGTTTGAAGCACTACCCTACCCGACGCGCCGCAGAGTGATACTGACAAATGGCGCGTCAAATGATGGGTGACAGACCAGTTAATCATGGACTGCCGTCTCCGGGGACGCGCTGATTGAGTCTGATGTAATGGATGTTATTACGGCCAGTGACATGACAACTGCGACCTCGCACACGGACGTGTTTGCCACATAACTATTGTTGAAGCAGGTGCCGAAAAAATGCGATAAAGGCGGTTTCTCTCAacgtgtttttattatttaatttttttttgggtgaGGGGAGCGAGCAGAACTGAAAGGGAGGGAGAGGATAGAGAGACTGGCAGAGGGAAATGGCAGTTGCATAAACTGTCACAGTGATGAGATCTTATCATTATGGCTCCAGATATGCCAGGGCTGCTGTTAGGCCATGACAAGGTTTAACGCCCCCATGATTCCACATGAACAGCTTCTCCAAGCGCAATCGTTTAACAATAGACTGTTAAATTGGATGGATGATCTGCCACAAACTGTCTCAAGTGCATCACCCGGATACAACAAGCTGGTAAATGGCACACTTCAGCTGAAACACACCTTGGATGAGACAGCACGCTGTCCCTGCAGGGAACATCCACACAAATAGAGCATCCTGTTTTCTACCATTTGATGCTGCCCTCACGTCTGTCTAGCCCTTAAGCGAATATATATCTGTGGCAAATGCCATCCCATGCCAACCTCAAGAGTTACACAAGGAAAGTAGCTTAAGAGCCTATTTTTTGCCTTGttcaaatttaattaaactgtaaaatagCTTTTGTATTTTAGGTTGTATGGGTACTGGCAAAAAATTCTTACAATTTTAATATAGAGTTTTTTTGGAAAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062487 lncRNA upstream 136658 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00062479 lncRNA upstream 228563 13027864 ~ 13031519 (+) True XLOC_031908
TCONS_00062477 lncRNA upstream 266580 12986853 ~ 12993502 (+) False XLOC_031907
TCONS_00062476 lncRNA upstream 269388 12986856 ~ 12990694 (+) True XLOC_031907
TCONS_00062447 lncRNA upstream 1861338 11397653 ~ 11398744 (+) True XLOC_031893
TCONS_00064821 lncRNA downstream 77532 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064608 lncRNA downstream 513487 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064822 lncRNA downstream 520774 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00062512 lncRNA downstream 1683328 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064823 lncRNA downstream 2038622 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00062493 mRNA upstream 5231 13232934 ~ 13254851 (+) True XLOC_031914
TCONS_00062492 mRNA upstream 24566 13207139 ~ 13235516 (+) False XLOC_031914
TCONS_00062491 mRNA upstream 24566 13207139 ~ 13235516 (+) False XLOC_031914
TCONS_00062490 mRNA upstream 28131 13206516 ~ 13231951 (+) False XLOC_031914
TCONS_00062489 mRNA upstream 55113 13201358 ~ 13204969 (+) True XLOC_031913
TCONS_00062494 mRNA downstream 65990 13333133 ~ 13334222 (+) True XLOC_031916
TCONS_00062495 mRNA downstream 239698 13506841 ~ 13514230 (+) True XLOC_031918
TCONS_00062496 mRNA downstream 339267 13606410 ~ 13688991 (+) True XLOC_031919
TCONS_00062497 mRNA downstream 459701 13726844 ~ 13734269 (+) False XLOC_031920
TCONS_00062498 mRNA downstream 463379 13730522 ~ 13734490 (+) True XLOC_031920
TCONS_00062481 other upstream 214581 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 1485350 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 1851945 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 2241550 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 2392941 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062509 other downstream 713802 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062521 other downstream 2276912 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 3783896 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 3938049 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 4050414 17317557 ~ 17317653 (+) True XLOC_031961