RNA id: TCONS_00064821


Basic Information

Item Value
RNA id TCONS_00064821
length 3219
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_031917
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13344675 ~ 13348236 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAGGCGTGGGCTTAATATTTTATTCTGCTGAGTGATTACATGTCTCGCTGCCCTTTCATAAAACCGGCCTTGAGGGTGACAAGTAAAAAGGCATCATAGCAAATGCTTTCATATCGACTGGCACTCACACTCACGTCTGCTCTCTGCATTCTGAACTGCAGCCCTGAGGCTTCAACTGAGATCTTTAAAACACGCTCAAACAGCGAAACACGCGCAACCGCATGTGGAGGcttacttttttttcattttatataaaataatgcagGAGTGAAAGAATGCTAGAgtgaaataatgaaaattaagCATCAATAcagaaactttttatttaaaaaagtaaatacattcTGAAAACATTAATTCTCCTTGTGGTATTAATGCAACATTCCACATCTTGAGTAGACGATGAATATTCCAGTGTTGTTTTTCATCCCTGATTATTTAAATGGCAGGAAAAGAAGCAAGCAAACCATTCGACCTCTAAATCAGATGTTTTCAGGCAGAGCTGAATATTGTCTGACAGTTGCACCGCACCAAATGAAACCATACGAGACAGTTTATCTCAGACAGACCTTCACCTTAACAGAAACAGCATTAAGAGAGACACTTTCACAAAGtcaaagcaaaaactaaaaaagCAAGGCTGAAGAGCACAAACACGCAGCGTGTGATCCCGCATGCAGAGATATCTCCATTTTGTGTCGGTTTAAACAGAAGTTTCACAGGAGCACAAAAACTGTCAATAAAGTAAAAAAGTTGCATAAAATATAACGCTTAGCATTTTTGATTCGTTATGTAgagtgtccgcggggtcttaaaaagtattaaaacttgatacagtgcatccggaaagtattcatagcgcttcatttttccacattttttatgttacagccttattccaaaatggattaaattatttcctccaaattctacacacaatacctcataatgacaatgtaaaaaagattttttgaaattgttgcaaatttattaaaaataaaaaacctgaaaaatgggAGTCTGTTGCTCTAACATGCGGTTTAAAGACCATAACCCCAAGGTCCTGcctctagagcacctttagaggtcagagaagtgaggtttacctgcaaagcacttcactagctggcctctagTACACTGACTTGCTAAACCTCACTTTGATTCAGGTCACAGCACTAAcataaccccgccggtcctataccacccaacctgctctaaACTGGGATCGAAACGGTGACTTTCtgcatggaagtcggttgctctaacaaggaggctaaagaccatggcctctagcaacTGTTGCTAAAGCATCTTTAGAGGCCGGAGGAGTAAgatcaccccctaaacctcactcctatctgggtcacggcaccaatgtaacaccGCCAGTCCTataccacccaacctgctctaaactgggatcgaaccggcaactttccgcatgggagtcggttgctctaacaacgaagctaaagaccatggcctctagagtCTGTCGCTAAagcatctttagaggtcagaggagtgaggtttacctgcacagcatttcactaactggcctccgttacactcactcccatctgggtcaagGCACCAATGTAACCACGCCAGTTCTATACCACcaaacctgctccgagctggaatCGAAACCGTtactttccgcatgggagtcggttgctctaacaaggaagctaaagaccatgaggtttacctgcacagtactTCACAaactggcctccgttacacttaccTGCTAAACCTCACtaccatccgggtcatggcactcATTAACCCTGCCAGTCCTTAGAGCATCTTTAtatgtcagaggagtgaggtcaCCCCCCCTAAACCTCATTCCTATCCGGGTCAAGGCACCAATGTAACGCCGGCAATCCTataccacccaacccgctctgatcTGGGATCGAACCGGTGACTTTCCACATGGGAGTTGGTTGTTTAACAgggaggctaaagatcatggcTCCTACAATTGATGTCAGAATTGTcaattttgggttaactatccctttaaaaaaaaaaaaaaaaaactccttaaGGATGCACAAGGGATAAAATACCCAGATAATGTTGAAGCAACAGGTTTGAGTTGAATAAATTCTTAAAATGCTAAAATCTCTACAAACaaagttcattttttattttgtttttaaaatgtgctaATAATGGAGATGGAAATGTCatgtaaaagaaaacaaataattggACCTTGTTGCCACagatacaaataaacacacacacatagagaaatGGCAGTACATTAATAGTCCATATATACTAGACGGCCAAGTGCATTAGAGCTAGCTGAAATGAGTCGCTACAGGGCCTGCTAATctaatgaagaagaaaaaaaaaataatcatggcCTGGCAGAGTCTGCATCAAATAATTAAAGTCATAAATTAAATCCACACTTCTACACTCTCTGACCTTCTCTCAGGCTCTCAACAAAGCTCTTAAACACGGTCACTCTCCATCAAGCCCAAAACAGCTATTGTATTAATGATTTCCCCCATTAAAACGATCAATAGAGCAGCGACGTTGAGTTTTAATAAAGCACGAATGCAAGGGGACTTTAGTCTTTTGCTGAGAGGAGAttctacaatgcaaatccattttTAGAAAGATTTAAACATCATCCGTGTGCTTTCAGACTGACAATGAATGGCATCAAAAGGGCAAAAAGCAGATTTAACACACTGCTATTGTGATGGTAAAAAGAGGATTCTGCAATGAAAGCCTTTAGAAGAGAAAATAAGTAGCTAAAAAAGAGACCCTGACATCGCTAATGTTTTCCCCCCTAAATGTAGTCCATTAATTAATTCACTGTGCGTTTACTGAATTTGTAAAATtagcatttataaaaaatatgataaattctctcaaaaaaacaaaacattacgtAGTTTCATTCTGTATCTAAACACCTacaaaaatttaatgtaataaatgtttAAGCTAGTATTCcatacttgatttttttttttcagttttatctgTAGTTTTATCCGTAAAATTATTTGACATTTCCTTCTGCCATTAAACCTTAAATCGTCTTCTGATGACTGCGTGTTAAATGGCAGTTGAGGTGTCGTAGGATGTGCATCAGATGAGATACCATATAAGAGTGAGTGCAGCCACTATGCCGTTGAGTATAGCCATACTGTAGCCCATGTGGAAAGAGTGTCCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064820 lncRNA upstream 77532 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00062487 lncRNA upstream 221251 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00062479 lncRNA upstream 313156 13027864 ~ 13031519 (+) True XLOC_031908
TCONS_00062477 lncRNA upstream 351173 12986853 ~ 12993502 (+) False XLOC_031907
TCONS_00062476 lncRNA upstream 353981 12986856 ~ 12990694 (+) True XLOC_031907
TCONS_00064608 lncRNA downstream 432394 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064822 lncRNA downstream 439681 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00062512 lncRNA downstream 1602235 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064823 lncRNA downstream 1957529 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 1957787 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062494 mRNA upstream 10453 13333133 ~ 13334222 (+) True XLOC_031916
TCONS_00062493 mRNA upstream 89824 13232934 ~ 13254851 (+) True XLOC_031914
TCONS_00062492 mRNA upstream 109159 13207139 ~ 13235516 (+) False XLOC_031914
TCONS_00062491 mRNA upstream 109159 13207139 ~ 13235516 (+) False XLOC_031914
TCONS_00062490 mRNA upstream 112724 13206516 ~ 13231951 (+) False XLOC_031914
TCONS_00062495 mRNA downstream 158605 13506841 ~ 13514230 (+) True XLOC_031918
TCONS_00062496 mRNA downstream 258174 13606410 ~ 13688991 (+) True XLOC_031919
TCONS_00062497 mRNA downstream 378608 13726844 ~ 13734269 (+) False XLOC_031920
TCONS_00062498 mRNA downstream 382286 13730522 ~ 13734490 (+) True XLOC_031920
TCONS_00062499 mRNA downstream 394663 13742899 ~ 13744681 (+) True XLOC_031921
TCONS_00062481 other upstream 299174 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 1569943 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 1936538 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 2326143 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 2477534 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062509 other downstream 632709 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062521 other downstream 2195819 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 3702803 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 3856956 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 3969321 17317557 ~ 17317653 (+) True XLOC_031961

Expression Profile

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