RNA id: TCONS_00062507


Basic Information

Item Value
RNA id TCONS_00062507
length 3439
RNA type mRNA
GC content 0.50
exon number 22
gene id XLOC_031924
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13920479 ~ 13987739 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGCGCTCTTACCCCCTCCCCTCAGGAGCGCGCGCTGCtgcttttcacacacacatacacacacacacacacacacacacactcctctttATCGCTCTCTTCCCCAAGTCTCGTGTTTGTGGAGTTTGGCACACGCGCAGCATCACATCGATCACCGTGTCATCTAAATATGTCGGTGTGAACGGAGAGAAAAGAGCAGAGAGAAGCCGAGGGAAGATGAGATCGGCGCGTCTGTGGATGCTGGTCTGTTTGGCGACTGCGTGTTGTCAGCTTGGCACCGGTGATAAATACGGTTGTCTGTTTGATGAAGGCCTTTGCTCCAGAGGGGAGATTTGCTGGGATGATGAGCTGTTTGGTCAGTGTCTTGCGGAGAGACAGGAAAGGTTTCGCTACAGGGTGACTGCAGTTCTGTTGGACAGACTACAGTCATTACTGCAAACACTCATGAAGGAAGGACTAACTTGGCAGGATGATGTTACCCAATCAGTGATTAAGAAAGAACTCAGCAAAGTGCCGAAGATCCCACTGTCTTCTGGCACAAAGAATGGCCCGTCCATAGAGTCTCAGAGTGGCTCTACAAATCAGCTCAACTCCAAACAGGCACATCCCTACATGGACTACATGATTGTCGATCCGCCTCAATCTTCTCTCCATATGCAAAGTCTGGATCCTTATAGCTACCAGAGATATGGTTATCAAGATGAAGAGGAGCGCTCTTTAAACCTGGTGGAGAAGGGCAGATATCCCGCATCCTCCTCTCGTgtcaggggaaatcctccagttCCTCCATCTCTGGATAAGGATGATCAGCTTCTGCAGGATCTGATGactctcctcctttcctctcCTGCACAGCCCAGCTCACGCCATCGTGTGGCAGCACCACACTCCACCTCATCTTTTTTCCAGGATCTGGACTTCCCGCTTGAATACAAGGATTATAACAAGGACACTTTTTCCCAGGATGAAAGGATCAGCAGCCAGCGAGAGCCAAAGAAAGGTCCCCAGAAGTATGGAAGCTTTTCTGCGCACAGCGCTGCAGGAACATCTCAACAAGGCCTAAATGAGCTGCTTCTGCAACATGGGTTTGATCTAAATCACCTGAACCCTGAGGAGATGGAGCGTCTCTTCTCTGTCCTTCAGTTCCTGCAAAATGAGCCACCAAATAATCAGAGAAAATCTGAAGCCAAGGATTCCTCTGCGCCTCCAAAAGTGATGAAGATTACCGAAGGAGAGATGACCCATGTGGTGGAGAAGGCTTCTTCACCCGCTTCAAATTCCTCCTCTCCTCCGCTCAAACCTGGACCTCAAACCTCCCCCAAGAGCCCCGGCTCCCCAGGGGCCTCAAAGGATAACTCCATCCCAACGGGCGCAAGTGTACTAGGGCCTTTAACTCTCAAGCAAGAGGAAGGGCCGCTTGGAAAGGGAGCCCTGAGTGTGCAACCAGGAAAGAATAAAACTAAGATAAAGGAGGAGTTTGGATACATTGTCACCAATCAGAGTGTGGTTGGTCCAGCTGTCACTTTCCGGGTGCTCCCGAACAGCCAGAATTTAACAGCAAGTGAGATTTCCGAAAAGACTGTGGCTCAAAAGAACCTTCTAGAAACAGAGACTGGTCTGAAGGTGCTTCAGGCAGGTGTCGGTGAGAAGAGCGAAGGCCATGCGTTGCCTGTGGCAACACGTGTTCGTGACAACACCCAGTGGGTCTTCCTCATGTttgtgggtgtggcttgtttggGTGGACTCCTGGTGGGGGCGTTGACCATCGCCTGTCTGCGCACTCATGCCCGTCATTTAGCATCAGGGAAACTGGGACTGGGGCCTGAAGCAGGAAACGTGACACATTATGAGTACCAGGATCTTTGTCGGCAGCACATGGCTGCTAAGTCCTCTCTGGGCAGGCAGGACTGTGGCGTCGGAGCTGCAGGTGGTGCTGGACCGGGAGCTGTGGGAGGAGGTGGCGGTGGAGGAACAGATACGTCACGTGTCAGCAGTGTGTCTTCACAGTTTAGCGACGCCCCTCAGCCAAGTCCTAGTTCACACAGCAGCACCCCCTCCTGGTGCGAGGAGCCAGCACAGTCTAACATGGATATCTCCACTGGGCACATGATTCTGGCATATATGGAAGATCATCTGAAGAATAAAGACCGCTTGCTTAAAGAGTGGGAGGCTCTGTGCTCCTACCAGGCAGAACCCAGCACCATCTCAGCAGCTCAGAGTGAAAGTAACATCAAGAAGAACCGCTGCTCGGATGCCGTGCCCTatgaCCATTCCAGAGTGAAGCTGAAAGCTGAGATTAACCCATCCAGGACAGATTACATCAATGCCAGCACCATTATTGAGCATGACCCCCGGATGCCAGCGTATATCGCCACCCAAGGACCCCTCTCACACACCATCTCTGATTTCTGGCAGATGGTTTGGGAAAGCGGGTGTACAGTCATAGTGATGATGACAGCTCTGGTTGAGGATGGAGAAAAGCAGTGTGATCGCTACTGGCCCGATGAAGGCTCTTCTCTATACCACATCTACGAGGTGAACCTGGTGTCTGAGCATATCTGGTGTAATGACTTCCTGGTGCGTAGTTTCTACCTGAAGAACGTCCAAACCCAGGAAACTCGCACCCTGACTCAGTTCCACTTCCTAAGCTGGCCCGCACAGGGAATACCCACTTCCACACGCCCTCTGCTGGACTTTCGCAGGAAAGTCAACAAGTGCTACCGTGGACGCTCCTGCCCCATCATTGTGCACTGCAGTGATGGTACAGGCCGGACTGGAACATATATCCTGATTGACATGGTCCTGAACCGCATGGCTAAAGGAGTGAAAGAGATCGATATTGCTGCAACCCTGGAGCACATTCGAGATCAAAGACCAGGAATGGTTCGCACCAAGGATCAGTTTGAGTTTGCTCTCACCGCTGTGGCCGAAGAGGTTAATGCTATCCTCAAAGCTCTACCGCAGTAAAATGAATGGCTGTATGAAGTcgactcacacacatacatacgcataCTATTACAACTACATGCATGTGGGCAATCATGCCTTAAATGGCCACCGAGGTTAGTATTATGGATGTGCATGAGTAATGGAACTAGTCAAGTACTTGTTTACTAAAACACGATTTGCACTTTGAGTTTTCTTTGCTGAAATGATTATTGCTAAACCCTTCACGTAAATCATGTTACACTACATAAGTTAGACTGTGATATGAAAGGGTGAAAGATCCAAGTGTGCGACATTTCAATCTTTATGGTTTTGATTAGGGTCATGCTTTCCACTAGATAAAGATCAGCTTTTATGATGGAAAGAAAGCCACCAGGAGATATGAGAGAGTTTTCTGTGGCCGAAGAGCACTTTTTTACCCACAGCAAACaccgttaaagggatagtttacctaaaTACTAAGATTTTGTCAAAAATTCACCCACCACTCAC

Function

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0030141 secretory granule cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100505-1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PTPRN (protein tyrosine phosphatase receptor type N).

Ensembl:

ensembl_id ENSDART00000155480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064822 lncRNA upstream 129159 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 131830 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 572243 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 653336 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00062487 lncRNA upstream 797055 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00062512 lncRNA downstream 962732 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064823 lncRNA downstream 1318026 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 1318284 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062524 lncRNA downstream 1907895 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 1909543 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062503 mRNA upstream 85 13896264 ~ 13920394 (+) False XLOC_031923
TCONS_00062506 mRNA upstream 146 13896398 ~ 13920333 (+) True XLOC_031923
TCONS_00062504 mRNA upstream 11988 13896301 ~ 13908491 (+) False XLOC_031923
TCONS_00062505 mRNA upstream 18861 13896398 ~ 13901618 (+) False XLOC_031923
TCONS_00062502 mRNA upstream 50321 13806466 ~ 13870158 (+) True XLOC_031922
TCONS_00062510 mRNA downstream 313475 14301214 ~ 14312611 (+) True XLOC_031926
TCONS_00062511 mRNA downstream 962211 14949950 ~ 14953352 (+) False XLOC_031927
TCONS_00062513 mRNA downstream 993022 14980761 ~ 15029092 (+) True XLOC_031928
TCONS_00062514 mRNA downstream 1139768 15127507 ~ 15131196 (+) True XLOC_031929
TCONS_00062515 mRNA downstream 1157384 15145123 ~ 15243369 (+) False XLOC_031930
TCONS_00062481 other upstream 874978 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 2145747 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 2512342 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 2901947 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 3053338 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062521 other downstream 1556316 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 3063300 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 3217453 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 3329818 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 3393746 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

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