RNA id: TCONS_00062512


Basic Information

Item Value
RNA id TCONS_00062512
length 6608
lncRNA type sense_over
GC content 0.38
exon number 2
gene id XLOC_031927
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 14949950 ~ 14957388 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctctcttttggtttgttttcagacagacattttaaaaagaaaacacagaCTGGAGGACGGTTTGATTTCCGAGGGCTTTTCAACGCTGTCATAAAATTGGAATTTATCGTTTCAATCATTCATGTTCGAAATATATGAATCCACAAATTATTCAAGAGACGGATTTCGTCCACTCGCCTGCAGATACTTTCTCTTTGCTTTTTGTTGATGGTGTTTGCCAAAACACAAGCCAGACTTTTAAAGTTTGAATAATTCATGAGATATAATTTGCCTGCATTAAAAAAGTTTTTGCAAAAGGGAGGGGGTGATCAGCAAACATATTCATAAGGTTAACGGAATGGCCACAGCGGCTTCCAACCCTTATCTAGCCAGCAGTAGTATATTATCGTCCGGCTCGATAGTGCACTCGGACTCCGGGGGTGGGATGCAGCAGGGCAGTGCTGCAGTAACCTCAGTGTCCGGTGGGTACAGAGGAGACCCAACGGTTAAAATGGTCCAAAGTGATTTCATGCAGGGCGCAATGGCAGCGAGCAACGGGGGACATATGCTGAGCCACGCTCACCAGTGGGTGACGTCCTTGCCTCACGCCGCAGCGGCGGCTGCAGCTGCCGCAGTGGCCGCAGCTGAAGCCGGATCGCCTTGGTCGTCTAGCCCAGTTGGGATGACAGGCAGTCCGCAGCAGCAGGACGTGAAAAATAACTCTGGGAGAGACGATTTGCACTCTGGGACTGCGCTGCATCACAGGGCCCCACATTTAGGTCCCCACCAGACTCACGCGGGTGCCTGGGGTAGCACAACTGCTGCCCACATCCCTTCGCTAACAGGgagccagcagcagcagcagtctcTCATATACTCGCAGCCTGGCGGCTTCACGGTGAACGGCATGCTCAGTCCGCCGGGCAGCCAAAGCCTTGTACACCCGGGTCTGGTGCGTGGCGACACCCCGGAGCTCGATCACAGcagccaccaccaccaccatcaccaccagcaTCAACATCACCAGCAAGCACATCACGGAGTGAACAGCCACGACCCGCACTCCGACGAGGACACGCCAACGTCGGATGACTTAGAGCACTTTGCCAAGCAGTTCAAACAACGCCGGATCAAACTGGGCTTCACGCAGGCGGACGTGGGCTTGGCGTTGGGCACTCTGTACGGGAACGTTTTCTCGCAGACCACAATCTGTCGATTCGAAGCTCTCCAGCTCAGCTTTAAGAACATGTGCAAACTGAAGCCGTTGCTTAACAAATGGCTCGAGGAAGCAGACTCTTCCACGGGCAGTCCCACCAGCATCGACAAGATCGCGGCTCAGGGCAGAAAACGCAAGAAGCGCACCTCCATCGAAGTGAGCGTCAAAGGGGCTCTGGAGAGTCACTTCTTAAAATGTCCCAAGCCTTCGGCCCAAGAGATAACCTCGCTGGCGGACAACCTGCAGCTGGAGAAGGAGGTGGTGAGAGTCTGGTTTTGCAATCGGAGGCAGAAAGAGAAAAGGATGACGCCCCCAGGAGTGCCGCAGACGCCGGAGGATGTATATTCTCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGCGAACCGGGCGACCAGAGGGTGACAACTACAAGTTCGTTCCACCAGGTAATTTTGGCGCATTAACTTCAACTGCAAATAACTGAAATTAGAAATGAACAACGCATTCTTTTGCCCCCTACCCCTTTACACCCATGTCTTGTTTGAGAGGCAAAAGGCGCAGGCAATTGTGTATGTTGTTATGGGACATTAAACTTCAAACAAAGGGATGAAATTCAGCTGCAACAATGCGAAGAACAGTGGCATCCACGAAGCTTCCATCCAACTTGGCAGAGAAGACTGCATGGTTTGATATTATCCAAAAATAtggaatggattttttttttggccttccaatccttacaaaaacaaaacaaagactgcCCTGATCTCCAAGATCACATCTTttgaaattgttgtttttttatgtaaaggaCTGAATCATACGTGGATTTTTGAGGACAAAATTAAATCAAAGATGACTTTTGAAAAGACTTAATATTCCGCAGCTGCACCTCTTTGAAAACCTTCTGTGCGAACATCCGTTGCCAAGTGGGCCAGAGCTGGTGCTGTGGATGTTTTCATGTGCTGCCATTTCCAAGCAGTATTCTTTGGTAGGTTTTAATAAACAAGACTATGTAAAGCCGGCAATATAGATTCATTAGATCAGATGCTGATCGgaattatttacttaatatttttcattaaatgctttgttttaatattttattcggGATACATACGAACTATTCCAAACAGTTATTTATTTCCCCCAGACTTGTGTAAAATGTCCCCCACCCCCTATTTTCGTTGTTGaccctttttgttttgtttaattttgtattcTCATTTATAAAAGAGCACAAATCTACACGAGCTGACTTTGACAGTAGGTAATAAGGGTATATTTTGATGTGATGATTTGATTGTAATTTAATTTCAGTAGTGATTCCGTAAGAGATGATCGAGAACAATAAATTTGTTAGAATGAAACAAGATTCTGTGTTGTACCTAAGATAGctgtttgtaatttttaacatGCTCCCTGAGCTGTATTTATAgccaaatgcattttaaaatgatgaCTGCTGAATATCAATGTCCTTATGTTTTGACATGCAggttagattttttattattattatgccaacAACATAtacatgtttaaataaactaCAGCCATCTTATAAATATTTCaccaaatgcattttttattaaaatacataaattgaTCATTGTAACGTGACAATCGTTCAGGCCTTAATATAGGAAGCATACAGCAGTTCAACATTTCTAGAACTTCTGCCATATCTAGTAAGCCCTTTTTTCTCAAGACAAACCACCAAAAGTGTCATCGCTTTAAATTACTCTaatgtataattattttgttagCAGACTGAAATGTGTTTCTGTGACAATTAATAGAGATAACAACGTTAACTAAACCTCACGAGAGAAAGAACAGAAAAAGTTGAACGCTTAGACCCAATGATTACAGTGACACGCGTTTTTGTGTAATGTAGCCTACCCTTTTTTATAGCGTTCACGCCAAATGTCAAATCCTCATGCATTCTATCAGCCCGACAACTGTGTTTGCTTTTTTACCCTTTTTACACATGCAAAATTCAAATGTTCTCATATCTGCCCATCCATCTATACTGATAAACAAATACTAAAATAGCCCGTTTAAAAAATCTAGTTTATATTGATgcaagtcaaatattttgcttctgcatatattttattgcattttcgaTTAGGCAATGTTTTAAGAAATGGCCTAGCTGAATTTTAGAATATTTCATATTGTTCTCAACAACAGAAATGATCAACTCTGAATTTCGTATAAGCTTATTAGATCATTTGATCACCTATATGttgtgcagtttttaatttaactattttgttttaatttccacGCAAAAATATCTAGATTCTCTGTCTTGTTAAAATTAAGCATAATAGTTCTATCTGACATCACAACGGGTTACCTGTGGCCTCCAGTCTAAAAAATATAGGCATGTAATATAATTCATACCTTAAACTTTAGCTGGTATAAACCTGTCATAAAGTGACTTTATGCTATATACCTAATATTATTCACGTAAGCCAAATATTAGAGATGAAATTATTCGGAGCTAGGTCCCATAAATAAAACGGACGAAATATTTCGCAAGCGGGCGAAAAAGACAATGTGATGGCTTCAACTTTTTCTGGGGACGACTATTCAGCAAAACGCGCAATTCACTCCCTAACATTTGAATTTCGCGGATGAATTCCCATACACTAGTTGCTTAGCAACTAAATTCAATCAATGTTATAGAATCCCCTCCTCTTTGTCCTTAATAATAAGAGTTGATGTCTAACtttaaaactaattttgtatGAGTTTAATAAATCCAGAGTAGGCTATATGgtatacatttaaaacataacaAATATTTCGAGAAGGAAAacgtgggagaaaaaaaaatatttgcggTTGATAGGTTAAATTAAGATGTAAATATCGCGATCCTTTGAAGCATTAATTATTAAGCAGCCTTCAGGTTTAAAAAAGGTAATCGACAAAAAACATGTCCAATGCCATGCGTTATTTTCAGTGTTTGCGTGTCATAGATATAAATAGCAATATTTCCTAAAAAGTATATCATTATATTTAATAGCtagatatatttaatatatttaaatatatgattaTATTTAACAGTTACATAGCTTTCAGTACAGGCCAGTAGGCCTATACAAGAAGGCCTGAAATATGTTCAGTATCAGATGACATAAGCTGCACTAAACTCCATAGTGTAAGTCACATGACTTTCGGCCCACGTGTTCAGATGTATCCACTACTGATAAAATACTTGCATGCATATACTATGGAAGTAATTGAGggagaaattaaattatttgaatGGATATAATTGAAAATCCCGTTCAAGAGAAAAGTTTTAGACCGTTTTAGAGCAACATAGACTATATATTCAGACAATTGGAGGTTCCGTCATAAATAAGCGATAAATGCTCGTGTACGTGCAGCAACATTTAAAACCTTTTCTACCACCATGATTTAgcccaaattataataatatcctTGCATTTCAGCTTGTAAAATTACATCTTGCCAAACCTTGCTAGAGAAATTAAATTGTATCACTGTACAATAACTTCGGCTATCAAATACAATGGTTACTCTAGAAATTCTAAGTAACAAtaactatatttgaatatattcaataattatgTATATACCTTCTGAAAATACTGAACATGCTTCAACATGAACTAAACAGTCTTGCAATATGGTCTCGAATGGCTCGCTTGTGTTACGCGAAATAAACTTTTCCACACAAAACAATTgcagtaaatgaaaataataattatataataataataataacaataataatatattcacaATGGAAATAAAGTTTGTACGATACTTTCGTTCTATACTGTtcataaaagtttatttaactcatTAGCTCAATAGATTTTTGACGACGtgtaattttaaaaaggaaatcaGCCTGGCGGACACCCATAAAGTTATGTGctataaatacagaaatattaataataataataataataagaagaagaagaagaatccaAAGTTGTATCCAAGACATTACATCGCACAGAATATCACAGCAACCAAGAGCAGCCATACTTTTTACTTAAAATTCACAACGTTAATTACCGTTAAACAATGTTGAAGTAATCGATGAGTTTTTAGGACTAGTTTGCAGTCTATTTTTAGATGAAGAGAAATAGGCCACGGTATTCCCGTTTTCAATTTTAACTTGTTTCTTTCAGTCTCTTAACCCCTCGTGCTGTGCACATTCATAATGCTCTTACATGGGACAGTTCTCAGTGGGGAGACGTCCTCCAGACCGCCTTTGTTAATCCATGTTCTATTGTCACCATGTTGGTAATAAACAGCAGAACTCATTGTATCATTTAAACCTCTGTATTGTTCTAATCCAAAATCACAGCATGACAAAATCCTGTCATTATATGCGTCATTtgcctttaatttatttatgctgcAAATAAGAGAATAATTTTTGCTTCTGATAGACTGAGGTCGTTTTCTATTTCTTTATTCACTTTTTCTCTTGtggtttaaaaatagaaaaacaaaaaagaaatagtcAGACTCTTAACACTAGGAAATGTTCAGTACGCGCAAGTAAAATTAAGTTTCGGGAATTTTTAGTAGCCATGCATTTCTTGTAATTTACATATACATTTGCATACTCCTAAAATATAGCTCTACACATTATCTGCGTGATTAATGCAGAAagtgccaataataataatgatttacaataataataataataataatgataataaataaataaataaatacataataatgataatataaatgaataataataataacaacaacaaagtagtaatagtagttttTACAGCTTATTCTCAAGTAGCaatagtttattttgtatttgcttTAACTAAATTCacgtaaaaatgtaaacaaatcctAAATGAAAAACAGGTTCCAGAGAACACAAGACACAACCAACGCACAGACTAACTCTTCAGCAGCCGCGGCGTGTCATAAGGCCCTTAGAAGTCCACGCAAGTCCCCAGTTGTGCTGTCTGGAGGACTCGccattctccctctctctctctctctttccctctggAGACCCACTGTAAACGCCGTTCATGTTCAGCGGGCGCAGGTGCTGCTCCCTCTGCAAACCACAGATTACATTTCCATCACATGCCTCCTGAAGTCATGTGAAACAATAACCAGACACATTTACTCAATACTCAAGACACACCAAAGCCACATATGGGGTGTTTTTTGTAAAGTTGCAACATTTTTACCAAACATATTTAcacgtatatttatatattattttattgaccaTTCGTTTtatttgtggtgttttggtgtgtCTTAGATCTAATTAATATCATCCATTGTATAAGTAATTGTATCAGGCTACTGTAGAGTACCAGTCTCTTTAGGCAGATAATAGTGCAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064822 lncRNA upstream 1159151 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1161822 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 1602235 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 1683328 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00062487 lncRNA upstream 1827047 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00064823 lncRNA downstream 348377 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 348635 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062524 lncRNA downstream 938246 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 939894 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 981233 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00062510 mRNA upstream 637860 14301214 ~ 14312611 (+) True XLOC_031926
TCONS_00062507 mRNA upstream 962732 13920479 ~ 13987739 (+) False XLOC_031924
TCONS_00062508 mRNA upstream 963203 13933464 ~ 13987268 (+) True XLOC_031924
TCONS_00062503 mRNA upstream 1030077 13896264 ~ 13920394 (+) False XLOC_031923
TCONS_00062506 mRNA upstream 1030138 13896398 ~ 13920333 (+) True XLOC_031923
TCONS_00062513 mRNA downstream 23373 14980761 ~ 15029092 (+) True XLOC_031928
TCONS_00062514 mRNA downstream 170119 15127507 ~ 15131196 (+) True XLOC_031929
TCONS_00062515 mRNA downstream 187735 15145123 ~ 15243369 (+) False XLOC_031930
TCONS_00062516 mRNA downstream 252684 15210072 ~ 15246534 (+) True XLOC_031930
TCONS_00062517 mRNA downstream 293284 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062509 other upstream 969379 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 1904970 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3175739 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 3542334 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 3931939 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062521 other downstream 586667 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 2093651 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 2247804 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 2360169 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 2424097 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014334 True 2106 mRNA 0.45 3 CM030128.1 9914125 ~ 9916789 (+)