RNA id: TCONS_00062514


Basic Information

Item Value
RNA id TCONS_00062514
length 555
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_031929
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15127507 ~ 15131196 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGATGCCACGTCAAATTTGTGCGACACTAGATGTAACAGCGGGCGCACGTTGAATCAGCACCGGCGAAGACTTCTAACATGACGGTTTTTCACGACGAGGTCGAAATAGAAGATTTTGAGTACGATGAAGAAACAGAAACATATTATTTCCCTTGTCCTTGTGGCGACAGATTCGCGATAACAAAGgagGATCTTGAGAATGGTGAAGAAGTGGCCACCTGTCCAAGCTGTTCGCTAATAGTAAAAGTAATTTATGATAAGGAGCAGTTCATGTGTGGGGAAGTAATTGAAGCACCAAAAACATCAGAAAACAAACTGGAGTTGGCTCAGAGCTGAGACGCTGATATGACTCCTTCAACTGATAATGGACTGTCATTTCACACTCACTCACTACATATGCAGATGTTTTCTGAAGAAACCGACTGGATCTCATGGACTTGATATATTTAGCGCCAGAATTTTGCACATTAACTACTATTCTTTtcaagatatttatttttttagaaacttTTAAATATATGCTGTGTTCTTGTTGCAAAATAAACGCACAGGAA

Function

GO:

id name namespace
GO:0002098 tRNA wobble uridine modification biological_process
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050522-545 Predicted to enable metal ion binding activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine and tRNA wobble uridine modification. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including DPH3 (diphthamide biosynthesis 3).

Ensembl:

ensembl_id ENSDART00000063644

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062512 lncRNA upstream 170119 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 1336187 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1338858 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 1779271 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 1860364 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064823 lncRNA downstream 174569 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 174827 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062524 lncRNA downstream 764438 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 766086 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 807425 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00062513 mRNA upstream 98415 14980761 ~ 15029092 (+) True XLOC_031928
TCONS_00062511 mRNA upstream 174155 14949950 ~ 14953352 (+) False XLOC_031927
TCONS_00062510 mRNA upstream 814896 14301214 ~ 14312611 (+) True XLOC_031926
TCONS_00062507 mRNA upstream 1139768 13920479 ~ 13987739 (+) False XLOC_031924
TCONS_00062508 mRNA upstream 1140239 13933464 ~ 13987268 (+) True XLOC_031924
TCONS_00062515 mRNA downstream 13927 15145123 ~ 15243369 (+) False XLOC_031930
TCONS_00062516 mRNA downstream 78876 15210072 ~ 15246534 (+) True XLOC_031930
TCONS_00062517 mRNA downstream 119476 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062518 mRNA downstream 137489 15268685 ~ 15300140 (+) False XLOC_031932
TCONS_00062519 mRNA downstream 137507 15268703 ~ 15299944 (+) True XLOC_031932
TCONS_00062509 other upstream 1146415 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2082006 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3352775 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 3719370 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 4108975 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062521 other downstream 412859 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 1919843 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 2073996 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 2186361 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 2250289 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

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