RNA id: TCONS_00062515


Basic Information

Item Value
RNA id TCONS_00062515
length 2239
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_031930
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15145123 ~ 15246534 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCGGAGTTCCTACAGGGCCTGCGAACGGAGGACTGAGGACAACGAAAAGCACGCTGAACGGGATTTTCCAGCGCTCTCTTCTGCATGTACCCACGCCGAGGCTAACCGGGAATAAAGGCTGTTTCCACCCGCCTCTCTTCGCTTCTCCAGATTCGTCCTGAGGCAACCTGTAAAGAGGGACTCCATGAAAGATGTCAGAGGAGGCGATTGTTATTGCCAAGTGGGACTATACGGCACAACAAGACCAGGAACTTGACATCAGGAAAAACGAGCGTCTGTGGCTCCTGGATGATTCAAAAACATGGTGGAGAGTACGAAATACGTCCAACAGAACGGGTTATGTTCCTTCCAATTACGTTGAACGCAAGAACAGTCTCAAGAAAGGATCTCTGGTGAAAAATCTCAAAGATACACTCGGCCTGGGAAAAACGAAGCGTAAAACTAGCACACGGGAAGCCTCTCCAACACCCAGCACAGATGAGTACTCATCTAATGGAGGAGGAGCCGAACGAATATATGACCTGAACACTCCGGCCATAGTCAAGTTTGCCTATAATGCAGAACGAGAGGACGAGCTCAGTCTGGTCAAGGGGTCCCGGGTGATGGTGATGGAAAAATGCAGTGACGGCTGGTGGAGGGGCAGCTATAGTGGTCAGATGGGCTGGTTCCCCTCCAACTACGTCCAGGAGGAGGAGATGGAGGACACGTCGGCTGACCTTCCAGCTGTCTTCTCCTCACAGCCGGGCCTCAGTAATGGCCAGAGCTCCAGAGTGCTTCACAGTGTTCAGACGCTTTACCCTTTCAGCTCCGTCACGGAGGAGGAGCTGAACTTTGAGAAGGGCGAGATAATGGAGGTACTGGAGAAACCAGAGAACGACCCAGAGTGGTGGAGGTGTAAGAACTGCCGTGGGCAGGTGGGTCTGGTGCCAAAGAACTATGTGGTTGTGCTCAACGATGGTCCATTATCGACAGCCTCAGGCTCACATTCCCAGCAGAACAGCCACACGGGACCATCCCACACAGGGCTGTTCGCCGGAAAAGACTGGTACTATGGGAGCGTGACACGACACCAGGCTGAGTGTGCGCTGAATGAGAGAGGGGTGGAGGGAGACTTCCTCGTGCGGGACAGCGAGTCCTCTccGAGTGATTTCTCAGTGTCTCTGAAAGCAGTCGGGAAGAACAAACACTTCAAGGTGCAGTTATCCAACGAAGTTTACTGTATCGGTCAGCGGCGCTTCAACAGTATGGATGAACTCTTAGAGCACTACAAGAAAGCTCCCATCTTTACCAGCGAACATGGCGAGAAGCTTTACCTTATCAAACCCCTCCAGTGACCTTCCACACACAAATGAGCCTTACAACCAGACCTCACCCGAGCCAAGAGATCTGCAACTCCTACTAAACGCTCATTTATTACCAGCAAACGGGACTTAACACCAACTTAAAGGATTTTACAGAGTAATAATGAGGCGAACTGTCATTTTGGGCCGTGTTTTATGGAGCTGTTCAATTTGGAGTGGTTTACCAAAAATGATTGTCGCCTTTTCCAAGAGATACTTGAGGCACTCGGGCATTGCCTTGACCGACAGTAACTATTCTGCTTATTGACTTTGAGATACAAGGAAAACAGGTGAAAATATAGAGCGTTTGGGCAGCACAATATTCAAGATTGTCAAACGAAAACAGTCAAAAGTGGAAGTACAAGAAACTGTATGTACATAGGAGTTGCCAAAGAGCGAGTTGGTGACAGGTACTCGTCGCCCCCTGCTGGATGAACTGAGAAATGTCAACAGGAGGGTCTTTATGTGATGAATGTTTTTGTAGACGCTTAACCAAATGTGCCACCTTCACATTCAAGCACTGCTCATCTGGTAtatatgtaatttatatataGAAGAACTATATCCACCTCATTCAGATTCACACATCTGTATCGACGTTAAAATGTTTGGTATAGagttattacagcaaaacactgtttGAATTTCGAAACGCTGCAGTTTAAAAAATGGATGGTTGGGTCTGTTTAATAATGAGTCGGCTCATTGAATAGTTTCTGAGCTTTTATAAAAGTATGGTACGCCTGAATGTTACTGAGCATTGTTAtttaaaatcatgtttatttaagcAGAGAATTAAAAGCTGCTGAGAAGAAATGTGTAGTCAGCTCCACCTCCATGATAACTGTGCAAAACGTTGAAATACTTTTGTTTAATTAAAGATTTTGCAAGAGTAA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-235 Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human NCK2 (NCK adaptor protein 2).

Ensembl:

ensembl_id ENSDART00000063648

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062512 lncRNA upstream 187735 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 1353803 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1356474 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 1796887 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 1877980 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064823 lncRNA downstream 62396 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA downstream 62654 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062524 lncRNA downstream 652265 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 653913 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 695252 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00062514 mRNA upstream 13927 15127507 ~ 15131196 (+) True XLOC_031929
TCONS_00062513 mRNA upstream 116031 14980761 ~ 15029092 (+) True XLOC_031928
TCONS_00062511 mRNA upstream 191771 14949950 ~ 14953352 (+) False XLOC_031927
TCONS_00062510 mRNA upstream 832512 14301214 ~ 14312611 (+) True XLOC_031926
TCONS_00062507 mRNA upstream 1157384 13920479 ~ 13987739 (+) False XLOC_031924
TCONS_00062517 mRNA downstream 7303 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062518 mRNA downstream 25316 15268685 ~ 15300140 (+) False XLOC_031932
TCONS_00062519 mRNA downstream 25334 15268703 ~ 15299944 (+) True XLOC_031932
TCONS_00062520 mRNA downstream 129784 15373153 ~ 15447996 (+) True XLOC_031934
TCONS_00062522 mRNA downstream 519278 15762647 ~ 15893049 (+) False XLOC_031936
TCONS_00062509 other upstream 1164031 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2099622 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3370391 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 3736986 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 4126591 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062521 other downstream 300686 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 1807670 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 1961823 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 2074188 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 2138116 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

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