RNA id: TCONS_00064823


Basic Information

Item Value
RNA id TCONS_00064823
length 2821
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_031933
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15305765 ~ 15308585 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttGAAGTGCAACATTTTGAATGAAATGTGAATAAAATTGTTGTAAAATACATTTGGTCTCCAAACACATTTTCACAGAAACCCAGGTTTGCATAAGCAACCGCACACACATAATGGTATTgtagtttatgaggactctctatAGGCATAATGCACTTTATACAGTGCTTATTATATGCCCTGAACACTAAAAGCAACCCTCAACCTGTGGTATATTATGAACGTGAAAAGATTTCAACATTATGTGATCGAGTACACCCAGGACACACCCATGCAATTATAAAATGTCTGTCCTTGTagaccaccaaaaccagtacataCAGATATTCTCAAAAAGATATCAACTGAATATAGATAAACATGAGTGATTTAACTGCTAAATGAATGGCGCTCTAGATTAGCAGATGTAATGATTTCATAACTCTATTCATATGGAGGACATTTGAGGTTGAGGCCAGTGTGCTGGAAATGTGAAAATGTCCTATAAAGACTACTAAGGAACAGAGGACAATGAACAGCCATGACATTAACTTGAAAAGACATATTGCTCTCCCAAATTCAGTTACAGAGGAAGTTTCTTTCAAACACCATGATTCATATTTATAAAGGTGCCATAGAGTGAATTGATTCAATGAGTTTTATTGTCCTCTGTTATCTATTGTACATAGTAGGCATGTGGCAAATATAATTGCAAAGTCTACAGAAtgggtttattttctcttttataaCACCTGAAATTTCCTCTGGATTGAAACTCTACCTTTACTCAGAAATACACGTGCAATATGATCATTCACTTgtcaaaaacatttaacaaattgTGGAGATGCCTTGTTAAATCTTTTCAACTGAAGTGGTGGAGAGGTTTATTGTAGCTGGAAGTGCTCCAGGGAGTTATCTTTAAAAAATTGGCTAAATTATAGCTATACTCGACAAACAGGAtagacagaaatgtatttagagtTGTATATTTAAGCTGTACtgcatataaaaaaatcaatCTCTGAATAAACTGATGAGTTTTATAAAGTTTACTGGTGTCCTCACACTCAATAGAAATCACAGTAAGTGCTGACATTACGTTAACATTAATGTACATTATTAtacggctgtctggaatacttgattctaatTGGTCTATCaagacattccaaggtatgttatttccagataacaaccactgaaacTAACACAAGCTCATTCATATATCTAGAATCATCTTGACTTTCAGTGATACGTTTACAtcttccaacataggctcattctaaaaacgtagccctactgtatatacatttctggagatcgcacaTTATGTAGCCAGAACAATGAATGGCTGCATCTTTCAAATGTCCTCTATAGACTACTAATAAATAGAGACAtgacatgaatttaaaaaatgcatattgCTCTTTCAAATTCAGCTGAAGAGAAAGTTTCTTTAAAACATCATGACTAATTTGTAAGGGTGTCATATGAGTGAACTGATTCAATGAGTTAAATTTAATCTACTGTACATAGAAGGTATGTGGCACATAATTGCAAAAAGTCTACAGAAAGGGTTTACATGCTCTTTTATGACACAAAAAATTAACCCTAGAATGAAACTCGACTCTTTACTCagaaataaacaagcaaaatgaGCATACTTCATTTATCAGATACATTTAACAAGATACCTTTTTAAATCATTTCAGCTAAAGTGATGAAGAGGTTTATTATAGCTGGATGTTATCCAGTGGGTTATTTTTGAAAAATAGGCTAAACTATAGCTATACTCAACAAACAGGacatacagaaatgtatttacaGTTGTATATTGAAGCTTTACTGCATTCGAAAATGTCAATCTCTGaataaacagatgagttttataAAGTTTACTGGTTCCCTTTCACTCAGTAAAAAGAGCCGACGTAACATTAATGATAAAGTTCATTATCATAAAGCTGGAATACTTGATTGTAGTTGGTCAGTCaagacattccaaggtatgttatttccAAATAACAACCATTGAAACTactaacacaggctcatccatACATTTAGAATCATCTTGATTTTCAGTGATACTTTTTACAtcttccaacataggctcattctgaaaacgtagccctatatacttcTCTGGAATTTGcaatttatgtagccagagctacatatcgCTGCATTTCGCCTTCCATTGAACAATACGGGACGGTAtgatcagtgcttaatttgttcattttactgatcccccttcTCAATCGCCCTCCTCCCGCATCTGCTGttaactttcactttcttccgtgacTCCTCAAcactcttcacttttgtctgcgacaacccctgctcttcactttcgtcctttGTCCGCGACACCCCTCCACCATTCAAAGGGATTGTGATATAATCTGAAAATATGGTAAGAATCGGTGGTTGTATTTAGAGAAGTGGGCAACGGggatcggtcagtcattcagtcagttgactgtggcctctggtggatttacatgggAAGAGCAGGTGTGAATAGCGCAtgcgagagacatttgaggtctcaaaaagcattcacagcagcctctggcggatccatgaaaacaaaaactgcaaaaaacatagctcctgtgAAGTATTTTGctttcttcagaaatgtatataggggtacgtaatcagaatgaacctgggttgacaTCTTTTACATGCTTGTCATGCTTTATGTTGTTGCGATCTTGTTGTTGACTTGATCTAATGACTAAATAATtagtaggttagtgtatgcttctttttgccatttttgtttCTTTCAGCTTTGcgtttaattgaataattaataaactag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0022408 negative regulation of cell-cell adhesion biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0014855 striated muscle cell proliferation biological_process
GO:0014856 skeletal muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0014857 regulation of skeletal muscle cell proliferation biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0033002 muscle cell proliferation biological_process
GO:0008283 cell population proliferation biological_process
GO:0040007 growth biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0005882 intermediate filament cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0070579 methylcytosine dioxygenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062512 lncRNA upstream 348377 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 1514445 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 1517116 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064821 lncRNA upstream 1957529 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064820 lncRNA upstream 2038622 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00062524 lncRNA downstream 587049 15895634 ~ 15897758 (+) False XLOC_031937
TCONS_00064609 lncRNA downstream 588697 15897282 ~ 15902635 (+) False XLOC_031937
TCONS_00062526 lncRNA downstream 630036 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00064610 lncRNA downstream 682350 15990935 ~ 15993964 (+) False XLOC_031939
TCONS_00064611 lncRNA downstream 683290 15991875 ~ 15993477 (+) False XLOC_031939
TCONS_00062518 mRNA upstream 5625 15268685 ~ 15300140 (+) False XLOC_031932
TCONS_00062519 mRNA upstream 5821 15268703 ~ 15299944 (+) True XLOC_031932
TCONS_00062517 mRNA upstream 46346 15250672 ~ 15259419 (+) True XLOC_031931
TCONS_00062516 mRNA upstream 59231 15210072 ~ 15246534 (+) True XLOC_031930
TCONS_00062515 mRNA upstream 62396 15145123 ~ 15243369 (+) False XLOC_031930
TCONS_00062520 mRNA downstream 64568 15373153 ~ 15447996 (+) True XLOC_031934
TCONS_00062522 mRNA downstream 454062 15762647 ~ 15893049 (+) False XLOC_031936
TCONS_00062523 mRNA downstream 454065 15762650 ~ 15790424 (+) True XLOC_031936
TCONS_00062525 mRNA downstream 591024 15899609 ~ 15900954 (+) True XLOC_031937
TCONS_00062528 mRNA downstream 722604 16031189 ~ 16034286 (+) True XLOC_031940
TCONS_00062509 other upstream 1324673 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2260264 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 3531033 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 3897628 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 4287233 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062521 other downstream 235470 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 1742454 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 1896607 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 2008972 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 2072900 17381485 ~ 17381582 (+) True XLOC_031962

Expression Profile

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