RNA id: TCONS_00062524


Basic Information

Item Value
RNA id TCONS_00062524
length 706
lncRNA type lincRNA
GC content 0.47
exon number 3
gene id XLOC_031937
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 15895634 ~ 15902635 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAAAACAGTTCACTGCGTTTTTTACCGCGTTTCTTTGATGCCAGTTTTGCCTTCTACTGACACATCAATGGCGAACAGCTCAACAGaaacacaaCCAAACAACAAGAAGAATAGCCTGTGTGCTTTCTTCAGAATGAAATGTTTGGCTTTACAAAAAGCCAATCGGCGTCGACGTCGAGGCAATAAAGTGTCTTTTTCACAGCCTCCGTCTGACACAGAACCCGTGGGTCCACAGCCAGGCCCATCAACAGATAATCTTCAGTCTGCTCTGTCCAGCTTTGAGTCTCAGGCTGTAGACGATCAGCGGGATCTTCTGCTTGGTCTGTCCAGCATCGAGCCTCTGGCTGTAGACGACAAGACTGATCTTCAACCTGGTCCATCCAGCAACAAGCCATCAAACTTTTCTGAAGGAAACAAAGCCAATCCAGAGCCTGCTGAAGAAACTCAACCAAAAAGCAAGAAGAGCAGGCTTTGTGCATTCTTCAAGAACATATGGCTGACTGTACAAAAAGCCAATCAGAGTCAACGTCGAGGCAGTAAAGTGTTTCCTTTTCAGCCTCCGTCTGACACAGAACCAGTGGGTCCACAGCCAGGCCCATCTAATTTCAAGACAACATCTGTACAAGATTTGTCTGGTCTTCAGCCTGCTCTGTCCAGCTTCGAGTCACTGCCTGTAGATGATCAGCATGATCTTCAGCTTGGT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0090527 actin filament reorganization biological_process
GO:0022610 biological adhesion biological_process
GO:0048513 animal organ development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0035107 appendage morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0033333 fin development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0030900 forebrain development biological_process
GO:0007155 cell adhesion biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064823 lncRNA upstream 587049 15305765 ~ 15308585 (+) False XLOC_031933
TCONS_00064824 lncRNA upstream 587049 15306023 ~ 15308585 (+) True XLOC_031933
TCONS_00062512 lncRNA upstream 938246 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00064822 lncRNA upstream 2104314 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00064608 lncRNA upstream 2106985 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00062526 lncRNA downstream 40863 15938621 ~ 15940105 (+) True XLOC_031938
TCONS_00064610 lncRNA downstream 93177 15990935 ~ 15993964 (+) False XLOC_031939
TCONS_00064611 lncRNA downstream 94117 15991875 ~ 15993477 (+) False XLOC_031939
TCONS_00062527 lncRNA downstream 95388 15993146 ~ 15993964 (+) True XLOC_031939
TCONS_00062529 lncRNA downstream 496871 16394629 ~ 16397525 (+) True XLOC_031941
TCONS_00062522 mRNA upstream 2585 15762647 ~ 15893049 (+) False XLOC_031936
TCONS_00062523 mRNA upstream 105210 15762650 ~ 15790424 (+) True XLOC_031936
TCONS_00062520 mRNA upstream 447638 15373153 ~ 15447996 (+) True XLOC_031934
TCONS_00062518 mRNA upstream 595494 15268685 ~ 15300140 (+) False XLOC_031932
TCONS_00062519 mRNA upstream 595690 15268703 ~ 15299944 (+) True XLOC_031932
TCONS_00062525 mRNA downstream 1851 15899609 ~ 15900954 (+) True XLOC_031937
TCONS_00062528 mRNA downstream 133431 16031189 ~ 16034286 (+) True XLOC_031940
TCONS_00062530 mRNA downstream 508965 16406723 ~ 16423323 (+) True XLOC_031942
TCONS_00062531 mRNA downstream 571018 16468776 ~ 16475879 (+) False XLOC_031943
TCONS_00062532 mRNA downstream 571035 16468793 ~ 16475879 (+) True XLOC_031943
TCONS_00062521 other upstream 351464 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062509 other upstream 1914542 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062481 other upstream 2850133 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 4120902 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 4487497 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062540 other downstream 1153281 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 1307434 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 1419799 17317557 ~ 17317653 (+) True XLOC_031961
TCONS_00062548 other downstream 1483727 17381485 ~ 17381582 (+) True XLOC_031962
TCONS_00062555 other downstream 2356642 18254400 ~ 18261416 (+) True XLOC_031969

Expression Profile

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