RNA id: TCONS_00065156


Basic Information

Item Value
RNA id TCONS_00065156
length 953
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_032878
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 26561981 ~ 26674943 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTAAACCGAGGGTTTAAAGGAGATGATCCTAtgaaaaacGCAATGTCAAACAAGCTTGGAAAGACACAAGgttgacagaatgttcatttcggggtgaactaatcctttttATCGTTTGAGGCACAGAGCGAATGAAATCAAACGGAGAGATGCAAGAAAAACATGCATAAAACAAAGTGATGACTGACAATGAGGGCATTATCATGATGAAGAAAATACAGTTACTGTCACATTTGGCTGCAGTAATCACACACAATTGTCAAAATAAAGCAAATCCCACCCTTAGTGCGTTGGACAAAGCTGACAGTATTGCTCTGAGGTGCCATATTCTCTTCCTTTCAGTCCTGTGAACAAAAAAGTGGGTAGCACAGCAAATGCATTTTAAGGATTGCCAAAGCATGATCGACACTCGTATAGTCTACAGGCATCTTGACACCAATCATTTACATAAACATTGTGCTGCACACAACATTATTTTGCATCCTAGTTTAAGTATGCCTATTTATTGAATTATGCAAATGGATTCTAAAATATTCCTCTTTTGTCTCTCGTCACACATGACAAATGACAAGGAACAACAATGATCGTCAAAATGCAAACATCTGAGTCATTTATGAAACATGATAATGAGCGAATCCAAAGGGAAAACATATTTTACCAACGGATGTGACAAAGGAAACCGCAAGAGATGTTCTCTGATGGTGCGCCGGTGACACAGGGACGCCGTTTTCCCAAATGTTTCTTTGACATCATCATTAGTGAATGTCTACACAAACATCTGTCCGGCGATACACAATGACAAGATGGCAGTCTGTTCCTGGTTTGTGAAGTGTCAGTGTAAAAAGTGTCTACATTTGTAGAAACCCTTAAATAAGTGCTTCCAATCCATAAAATCATTCATTGTTTTGTGTCCAGAatgcaatttaagaaaataaatgcatttgtttgttaC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065152 lncRNA downstream 351169 26290783 ~ 26309847 (-) True XLOC_032876
TCONS_00065151 lncRNA downstream 1392708 25267951 ~ 25268308 (-) True XLOC_032872
TCONS_00063881 lncRNA downstream 1495351 25161976 ~ 25165665 (-) True XLOC_032868
TCONS_00065150 lncRNA downstream 1791870 24850093 ~ 24869146 (-) True XLOC_032866
TCONS_00063875 lncRNA downstream 2276431 24381611 ~ 24384585 (-) True XLOC_032863
TCONS_00065157 lncRNA upstream 150007 26824950 ~ 26825924 (-) True XLOC_032879
TCONS_00063898 lncRNA upstream 203133 26878076 ~ 26879002 (-) False XLOC_032880
TCONS_00065158 lncRNA upstream 360709 27035652 ~ 27038371 (-) True XLOC_032881
TCONS_00065159 lncRNA upstream 366804 27041747 ~ 27055863 (-) False XLOC_032882
TCONS_00063902 lncRNA upstream 373780 27048723 ~ 27053505 (-) False XLOC_032882
TCONS_00063896 mRNA downstream 101095 26557979 ~ 26559921 (-) True XLOC_032877
TCONS_00063894 mRNA downstream 435202 26063965 ~ 26225814 (-) False XLOC_032875
TCONS_00063893 mRNA downstream 580630 26063962 ~ 26080386 (-) False XLOC_032875
TCONS_00063895 mRNA downstream 580632 26066003 ~ 26080384 (-) True XLOC_032875
TCONS_00063892 mRNA downstream 708146 25934493 ~ 25952870 (-) True XLOC_032874
TCONS_00063897 mRNA upstream 199896 26874839 ~ 26895750 (-) False XLOC_032880
TCONS_00063899 mRNA upstream 213800 26888743 ~ 26895314 (-) True XLOC_032880
TCONS_00063900 mRNA upstream 366651 27041594 ~ 27057702 (-) False XLOC_032882
TCONS_00063904 mRNA upstream 430019 27104962 ~ 27108844 (-) True XLOC_032883
TCONS_00063905 mRNA upstream 437941 27112884 ~ 27123327 (-) False XLOC_032884
TCONS_00063885 other downstream 1472233 25188023 ~ 25188783 (-) True XLOC_032870
TCONS_00063877 other downstream 1818730 24842170 ~ 24842286 (-) True XLOC_032865
TCONS_00063876 other downstream 1875073 24785827 ~ 24785943 (-) True XLOC_032864
TCONS_00063859 other downstream 2607400 23955374 ~ 24053616 (-) False XLOC_032853
TCONS_00063855 other downstream 3266117 23394843 ~ 23394899 (-) True XLOC_032849
TCONS_00063901 other upstream 366804 27041747 ~ 27048982 (-) False XLOC_032882
TCONS_00063903 other upstream 376399 27051342 ~ 27055863 (-) True XLOC_032882
TCONS_00063923 other upstream 2336968 29011911 ~ 29084554 (-) False XLOC_032900
TCONS_00063930 other upstream 2370054 29044997 ~ 29052872 (-) False XLOC_032900
TCONS_00063931 other upstream 2386707 29061650 ~ 29084651 (-) True XLOC_032900

Expression Profile

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