RNA id: TCONS_00064464


Basic Information

Item Value
RNA id TCONS_00064464
length 2751
RNA type nonsense_mediated_decay
GC content 0.45
exon number 5
gene id XLOC_033181
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 51528763 ~ 51541488 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGGCGCTAGAGGGCAGCCGTCGTCCGTTTGAGCCAATCAGAAAGTTCAAAACGAGTGACGCGCGTACGTCGTGCACTCGCAGGCCTGCGTGAAGCGCGAGTGGCAAAACCAACGGGTGTTTTAGCATAAATGAACGCTTTACGAGATTCCTCACGGTTTCCACGCCGCGAAATGTTCGAGGAGATGTCAGTGGAGAGAAACTGGACGGACACCGAGACCAGGGCTCTGCTGTACATCCGACAGGACGAAGAGATCAGCAGGCAAATCAGCGGGACCGTTCGCGACTCGCTAATATACGCCGAAATCTCGAGGCTCCTCAGTGCTCAGGGGATCCACAGAACCCAGCGGCAGGTCACAACCAAGCTGAAAACCCTCAAGCAGAAGTTCCTGAAAATACACGAGCACCACAAAAACAGCGGGCACGGGAAAGTGTACTGGAATTGCTATGATCTCTGCAAGTCTATCTGGGGCAGCGGAAGACCCACAAACACTTCAACacttcatcataataataataacacagtgAAACTCGAAGAGCCGCAAAGTACATCCATTGAAGACGCGAGAAATGAGAGCAGATCCACGGATATTGAAGTGTCCATCAGTCACGACGAGGAGACCGATGACCTGACAGAAGtcacatgcacacagctctccAGTGAGTGCACAGCTCTTTAGGCCACACCCTCCTCATCAACAGGGCTTTTCTCCGTCACATTCACACAGCTCAGATCTTCTCTTGAACACTTCTCACTTCAGCACAACTACTGAAGCCACACTGCTGCCTTTCAGCATAAAGACAATATCCAGCAAAAACTATGCCACGTCCGCTGTCTGAAGTGTGGAAACATTTCACCCCAGCATGTGTTTCAGGAAAGGCTGTGTACATTTGCAATTACTGCGCGCAGCCGTATGTTAAGAACGCCACAAAGTTGCAGCGACATATAGTCAAGTGCCTAATGTCTCATCAGGGGTCAATGCAAGCAGCGACCGGCAAGAGTTTCTCTGTTAACATTAGAAGTGAAGATGACTCCAGTGTTCACCCTCTCGACAGCTCTAGAATCGAAGGACTGATGAATGttaGTGTCGCTCCGCCTGTGAAGAAGAAGCCCAGAACTCATTTGACTGTGGAGCGTGTTCGTGATGAAGAGCCTCTGCTTGTGCAGAACCAGAGGGAGTTTGAGGAGCGCTGGCGGCGGGACGCCAGAGAGGAACACAAGGAGGAACGGGCCAGTCTGATGACCATGTGGAAGGAGATGATGGAGTTTCAAGGGAACCTCTTAAAGGAGTTTATTCACCGCTCATCCTCGTCTACATCTCTGCCTTCACTTCCGTCTTACAGCAGACCTGCTCATCACAATCAAGGGCCATCTACATTTCCAAGCACTAGTTACATGGCACCATACACCTCGCCAGAAGCCGAAACGGAGAACGAGAGCATGATCTCGCATGAGGATgacgaggaggaggaagaggagaaatACATCATAACAGCTCCGATTGCCCCTGTGCCGGACTCCCAGCCTGTAAACCACGTAAACGACAGCCAATCAAAGGCCACAGAGACGCTTACACCTGCGGCCACACAGACATCAGGACAGAGCGATCTGCAGACGACAGTGCTGCGCAGACAAGAGAGAGTCCTGCAGCTTCAGGAGGAGTATTACTCTCTCAAAATCCAGCATCTCAAACACAAGATCAGCAGAGACGCTCAACAGCACCAACAGCACAGTTAGTGCGTCCATTCACTACTTTCACTGTCAAAATGATCAGCACCCTTGGGAAACATGACCAAAGAAGGCTGTGGACAAAAATAGGATTGATTGTCCACTCGTTTCTGTGAAATgtaagcaaagagcttagaatgaccaagaggcgacactctagtgtaatttgggaaacagccactagagggtgcggtggccattttggaatgaaaccTCCAAttgaacaacagcatattataagtctgtaaaataaactattaaaagagctgatgattgtgataataagtgttgtattgtcgtctttcaggttgtatctaagttttaatgcgctttttaaataaataaataaataaaaaacaaagcagctgcttgctatCGCAACAGTATTgggatccaatggacagccgatcactttgactccaaaatggcggaatccagggctgttgctgggcactgctgttgcaatgaaacgttctattgagtgttgcctcttggtcattctaagctctttgatgtAAGGGTTTgtgaaatgtatttgttttaaatgaaagcatttaaatgtttgtatttgaAAAGGGTGCCAATCATTTTGATCACATATGtacagttcaagtcaaaatttttagccttCCTAAATTATTAGTCACCCTGTACATtttatttcccaatttctgtttaatagaaagattttcttgcaacacatttctaaacataagttttaataacccatctttaataactgatatattttatctttgccatgatcacagtaaataatatttgactagatatttttcaagatactagtattcagcttaaagtgacatttaaaggcctaactagatTAAtttggtaagttattgtataacagtggtttgttctgttgacgatcggaaaaaaaataatgcttaagagggctaataatcaGGGTTTCTGCGGGATCTTATAAAGTCTTAATGTCGTCGGTgaaatagcctagtggttagcgcactgacacatggtgcagtagcacttccGGGCGT

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0099023 vesicle tethering complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131121-72 Predicted to be active in cytosol.

Ensembl:

ensembl_id ENSDART00000154512

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065237 lncRNA downstream 1025568 50495622 ~ 50505438 (-) True XLOC_033174
TCONS_00065236 lncRNA downstream 1035123 50480139 ~ 50495883 (-) False XLOC_033174
TCONS_00065235 lncRNA downstream 1044501 50480139 ~ 50486505 (-) False XLOC_033174
TCONS_00064757 lncRNA downstream 1046608 50476213 ~ 50484398 (-) False XLOC_033174
TCONS_00065234 lncRNA downstream 1054517 50457968 ~ 50476489 (-) False XLOC_033174
TCONS_00065239 lncRNA upstream 485003 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00064474 lncRNA upstream 690263 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA upstream 690374 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA upstream 692253 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00064758 lncRNA upstream 1711069 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064461 mRNA downstream 144310 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064460 mRNA downstream 144310 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064459 mRNA downstream 144310 51020918 ~ 51386696 (-) False XLOC_033180
TCONS_00064462 mRNA downstream 144350 51180106 ~ 51386656 (-) True XLOC_033180
TCONS_00064458 mRNA downstream 429172 51009981 ~ 51101834 (-) False XLOC_033180
TCONS_00064465 mRNA upstream 7715 51549203 ~ 51573975 (-) False XLOC_033182
TCONS_00064466 mRNA upstream 7843 51549331 ~ 51556308 (-) True XLOC_033182
TCONS_00064467 mRNA upstream 34436 51575924 ~ 51666739 (-) False XLOC_033183
TCONS_00064468 mRNA upstream 38768 51580256 ~ 51665454 (-) True XLOC_033183
TCONS_00064469 mRNA upstream 228272 51769760 ~ 51771634 (-) True XLOC_033184
TCONS_00064457 other downstream 774558 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 783461 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 785751 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 786077 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064450 other downstream 943276 50585502 ~ 50587730 (-) True XLOC_033175
TCONS_00064491 other upstream 1381885 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 1491508 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 1732348 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 2964970 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 2965617 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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