RNA id: TCONS_00064481


Basic Information

Item Value
RNA id TCONS_00064481
length 1623
RNA type mRNA
GC content 0.53
exon number 8
gene id XLOC_033190
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52362395 ~ 52428826 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGTCGGCGGTCGCTGCCATGCAGCGGTTTTACGGTATTCCAGTGACAGGAATCCTCGACCAAACAACCATCGAGTGGATGAGAAAACCTCGGTGTGGAGTTCCAGATCACCCTCACATCAGTCGGCGGAGGCGAAATAAACGATACGCTCTCACCGGTCAGAAGTGGAGAGACAAAAAGATCACATACAGCATCCATAACTTCACGCCGAAAGTTGGTGAGAAGGACACGCAGAGGGCCATCCGGCAGGCGTTCGACGTGTGGCAGACGGTGACGCCGCTCAGCTTTCAGGAAGTGGCCTATTCGGAGATCAAGAACGAGGGCAAAGAGGCCGACATCATGATCTTCTTTGCCTCGGGTTTTCACGGCGACAGCTCTCCGTTTGATGGAGAGGGAGGGTTTTTAGCGCATGCTTATTTTCCCGGGCCGGGTATCGGTGGAGACACACACTTTGACTCCGATGAGCCCTGGACGCTTGGGAATGCCAATCATGACGGCAATGACCTGTTCCTGGTGGCTGTTCATGAACTGGGACATGCATTGGGTCTGGAGCATTCGAGTGACCCCAGTGCAATCATGGCCCCCTTCTACCAATACATGGAGACACACAACTTCAAACTGCCTCTAGACGACCTTCAGGGGATCCAGAAAATATACGGTATACCGACAGCCATGCTGGAGCCCACGCGTCCTCTTCCTACATTCCCCGCACGCCGCCCACACTCCACCTCCGAGCGCAAACACGAGCGTCAGTCTCGGCCCGGGCGCCCGTCTGCTGGAGATCGGCCATCCTCTCCGGGACATGGAAAACCCAACATCTGCGATGGCAACTTCAACACTGTGGCCTTCTTTCGGCGGGAGATGTTTGTTTTTAAGGATCGCTGGTTCTGGCGTTTGCGCAACAACAAAGTTCAAGAAGGTTATCCTATGTTGATAGACCACTTCTGGAAGGGTCTACCTCATCGCATCGACGCTGCTTACGAGAGATCAGATGGAAAATTTGTGTTCTTCAAAGGGGACAAATATTGGATCTTCAAGGAGGTTACGGCGGAGCCTGGTTACCCGCACAGCCTGGTGGAGTTGGGCAGCTATTTGCCTAGCGATGGCATCGACACAGCCTTACGCTGGGAATCCGTGGGCAAAACTTACTTCTTCAAGGGTGACCAGTACTGGCGATACAATGAGGAGAAGCGCACCACTGACCCGGGCTATCCCAAACCCATtggcatctggaagggcatccctgaCGCTCCACAAGGAGCCTTTGTCAGTCGAGAAGGATTTTATACCTACTTTTACAAGGGAAAGGATTACTGGAAGTTCGATAACCAGAAGCTAACGGTGGAGCCAGGCTACCCCAAATCAATCCTCAAAGACTGGATGGGCTGCGATCAGTCGGAAGTAGAAAAGAACAAGGACCGTCACCTTCCTCACGATGACGTCGACATCATGGTTGCCATAAATGATGTGCCCAGCACTGTAAACGCAATCGCTGTGGTCATCCCATGCATCCTTTCACTGTGCATTCTGGTCCTTGTATATACTATCTTCCAGTTCAAGAATAAAAACGTCCAGCAGCACGTGACCTACTACAAACACCCCGTGCAGGAGTGGGTATGA

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040724-262 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and membrane. Predicted to be integral component of plasma membrane. Orthologous to human MMP24 (matrix metallopeptidase 24).

Ensembl:

ensembl_id ENSDART00000187624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064474 lncRNA downstream 129760 52231751 ~ 52234719 (-) False XLOC_033188
TCONS_00064475 lncRNA downstream 129760 52231862 ~ 52234719 (-) False XLOC_033188
TCONS_00064476 lncRNA downstream 129831 52233741 ~ 52234648 (-) True XLOC_033188
TCONS_00065239 lncRNA downstream 329823 52026491 ~ 52034656 (-) True XLOC_033186
TCONS_00065238 lncRNA downstream 825931 51528763 ~ 51538548 (-) False XLOC_033181
TCONS_00064758 lncRNA upstream 851661 53252557 ~ 53258068 (-) True XLOC_033203
TCONS_00064500 lncRNA upstream 872944 53273840 ~ 53282573 (-) False XLOC_033204
TCONS_00064759 lncRNA upstream 1210219 53611115 ~ 53690618 (-) True XLOC_033208
TCONS_00065240 lncRNA upstream 1764036 54164932 ~ 54173201 (-) False XLOC_033212
TCONS_00065242 lncRNA upstream 1764036 54164932 ~ 54174073 (-) False XLOC_033212
TCONS_00064477 mRNA downstream 15828 52339548 ~ 52348651 (-) False XLOC_033189
TCONS_00064478 mRNA downstream 15894 52342188 ~ 52348585 (-) False XLOC_033189
TCONS_00064479 mRNA downstream 15917 52345877 ~ 52348562 (-) True XLOC_033189
TCONS_00064473 mRNA downstream 129361 52226682 ~ 52235118 (-) False XLOC_033188
TCONS_00064472 mRNA downstream 129683 52226682 ~ 52234796 (-) False XLOC_033188
TCONS_00064482 mRNA upstream 67243 52468139 ~ 52484566 (-) True XLOC_033191
TCONS_00064483 mRNA upstream 120571 52521467 ~ 52566574 (-) True XLOC_033192
TCONS_00064484 mRNA upstream 236412 52637308 ~ 52661824 (-) False XLOC_033193
TCONS_00064485 mRNA upstream 237098 52637994 ~ 52644182 (-) True XLOC_033193
TCONS_00064486 mRNA upstream 262201 52663097 ~ 52675630 (-) True XLOC_033194
TCONS_00064464 other downstream 822991 51531006 ~ 51541488 (-) True XLOC_033181
TCONS_00064457 other downstream 1608031 50754501 ~ 50756448 (-) True XLOC_033179
TCONS_00064456 other downstream 1616934 50744165 ~ 50747545 (-) True XLOC_033178
TCONS_00064455 other downstream 1619224 50744160 ~ 50745255 (-) False XLOC_033178
TCONS_00064454 other downstream 1619550 50742315 ~ 50744929 (-) False XLOC_033178
TCONS_00064491 other upstream 522477 52923373 ~ 52923489 (-) True XLOC_033198
TCONS_00064492 other upstream 632100 53032996 ~ 53033111 (-) True XLOC_033199
TCONS_00064499 other upstream 872940 53273836 ~ 53279930 (-) False XLOC_033204
TCONS_00064524 other upstream 2105562 54506458 ~ 54506586 (-) True XLOC_033221
TCONS_00064525 other upstream 2106209 54507105 ~ 54507178 (-) True XLOC_033220

Expression Profile

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