RNA id: XM_039806858.1


Basic Information

Item Value
RNA id XM_039806858.1
length 1725
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC120562910
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3792746 ~ 3814570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTGCAGATACTGTCGCCAAGGCCCCACGTCCTGAGCTTGGAATGTGGAGATATAAGAGAAACGAAGAGAACAgtggggaggaagaggagaatcGtttctgtgtgtttgtgtgtcttcagGTTGCCAGGAAGTCGGTCCTGGATCAGCTGAACCACATCCTGTTCTCTGATGATCAGATTCCTGATTACATCATCCTGATCAACACCACAGACTGGCAGGGacaggtctgtctgtctgtctgtcttcctgtctgtctgcctgtgtgtaatgtgtgtgttccCAGCTGTAACTGTAACTCCCAGACGCCGCCGCCGGTGAAGGTGGTGCTGGGCGGAGACCAGAGCTACCTGAGCACCGTCCTCGGCTGCTTCGTGGAGCAGCTGGCCAGCAAGACGCCTGATTGGCTGAGCTACTTCCGCTTCCTCATCCTCCCCATCGGAGCCCACCCGCTGGCCAAGTACCTGGCCGCCCTGGACAGTAAATTCAGCGCCCTGTTCATGGACGCCAGCTGGAGGGAGCTGTTTGGCCGCCTGGAGCCCCCGCCACTCGATGTTGTGGGTGTAGCCGGGCGAGTGTCTCAGTATCTGAGCGGAGCGTCCGTGTCTCACCTGTGTCCGATCTCAGAGGCGATGCTGACCTGCAAACACAAGAGCCCCGACGACGACTCCTGCCAGAAGTTTGTTCCTTTCATCGGGATGGTGAATGTCGGCATCGTGGAGCAGAAACTCCACTACTCCACCTCTGttctcctttcctttgtctcctttccttctcctcccttcctcctcctttccttctcctctcctccttcctccacccctccttctccttcAACCAGCGGAGTGGGGGAGGCGGCCGGTCTGCAGGTGGACTACTGGAcccagggaggaggaggaggaggaggcgagagGAAGATGAAGAGCAGTCTGAAGAGCCGCTGCCTTCAGGTGTCGAGGATCAGCGGAGGAGAGCAGCTGAGCATCACCGTGGTAACCAAAGAGAAGAACAAGAAAGTCATGTTCCTCAGTAAGAAGATGAAGGAGAAAGAGGCGGAGTCGAGGAGTCAGCTGATCGAAGGAATCAACAGACTGATCTGCACCTCCAAACACCAGCACACACtgagagtctcTATAGACGGTGTCGAGTGGAACGACGTCAAGTTCTTCCAGCTCGCCGCTCAGTGGCCGACCCACGTCAAGCACTTCCCCGTGGGGCTCTTCGGCTACAGCAAGCCCTGACCCCCGGGTCATGTGACCCCCGAGTCATGTGACCCCCGAGTCATGTGACCCCCGAGTCATGTGACCCCCGAGTCATGTGACCCCCGAGTCACATGACCATCCCTCTAAAGTTGGACTGCTCTgcatcacacagagacacagactcaGATGTAGAAACATATTTACGCTCTGCCATCCTTTAGGTAGCTCGCCATCAGAACTCCTGTCCCAGAAACCCCTGAGAGGGACTCTTGAGTTCTGGATGTTATTTTTATAAAGCTGTGGGCACAGGCGCCGATCCagtgggtgctccggagctcgagcacccactggtgtgccagactgccagcaGGCTCCATTCATCTAAAATTAAACATAGCAGTCGGTGctgagtggagcgtctgtcacagtgtgattggttatgtcgctgtcagtccccgGCTCCATATCccatccaccaatcacagcgtctctcgGATGAAAACGCCTCTTCAGTGCCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640872.1 lncRNA upstream 12743 3778708 ~ 3780003 (+) True LOC120569364
TU1709 lncRNA upstream 47040 3745332 ~ 3745706 (+) True G1233
TU1679 lncRNA upstream 110817 3661852 ~ 3681929 (+) False G1219
TU1681 lncRNA upstream 110817 3661852 ~ 3681929 (+) True G1219
TU1677 lncRNA upstream 115673 3661852 ~ 3677073 (+) False G1219
TU1845 lncRNA downstream 68731 3883301 ~ 4118166 (+) True G1324
TU1855 lncRNA downstream 122179 3936749 ~ 3937664 (+) True G1333
TU1884 lncRNA downstream 424673 4239243 ~ 4239738 (+) True G1360
TU1885 lncRNA downstream 424939 4239509 ~ 4239738 (+) False G1360
TU1889 lncRNA downstream 433499 4248069 ~ 4251473 (+) True G1361
XM_039808845.1 mRNA upstream 137104 3647024 ~ 3655642 (+) True psen2
XM_039805718.1 mRNA upstream 224736 3564722 ~ 3568010 (+) True LOC120562172
XM_039794067.1 mRNA upstream 302736 3488343 ~ 3490010 (+) True LOC120555395
XM_039794054.1 mRNA upstream 314230 3468147 ~ 3478516 (+) False LOC120555387
XM_039805633.1 mRNA upstream 344253 3413425 ~ 3448493 (+) True rrbp1b
XM_039815757.1 mRNA downstream 429688 4244258 ~ 4247932 (+) True pgap4
XM_039815663.1 mRNA downstream 438549 4253119 ~ 4269471 (+) True LOC120568266
XM_039815719.1 mRNA downstream 498037 4312607 ~ 4332900 (+) True tpcn3
XM_039815639.1 mRNA downstream 593868 4408438 ~ 4436086 (+) True pex6
XM_039815632.1 mRNA downstream 594689 4409259 ~ 4436086 (+) False pex6
TU1635 other upstream 293642 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 312616 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 532988 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 635608 3128089 ~ 3157138 (+) True LOC120557752
TU1916 other downstream 618806 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 640637 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 1163213 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 1219995 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 1403498 5218068 ~ 5222744 (+) True G1756

Expression Profile