RNA id: XM_039815632.1


Basic Information

Item Value
RNA id XM_039815632.1
length 3553
RNA type mRNA
GC content 0.63
exon number 19
gene id pex6
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4408438 ~ 4436086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTATTTTCCATATGATGTTGATGTAGTTCCTCCGGTCGTCCACCAGATGGCGGTGATGACGCGGCGccggaagaagaagaaaaagagaagaagacgCAGGTCCAAGATGGCGCAGGTGCAGGCTGAGTTGCGTTGTTTGGAAAGTTTCCCCTCGCGCCTGAGTCCTCTGgatgttttaatattaaaatcTCACTCAGATATAGTTTTCCAGAATGACACGGACCCACCGACCGTGCTCTTCACCCCGCAGCCGCCTCAGGGAACCACGAGCCCGGGCATTTTGCTGCGCGTTCACCCGACTACTGCGGAGGAGACCGGGGGTCCGAGCGCCGAGGCGGAGACTGCGGGAGCGCCGCCGTCCGGGGGCGCGGTGCGGCTGTTTGCCAGCCGGTTCTTCCTGCGGCACCACGGGCTCCAGAGTCTCGGCAGCAGCGGGACCGTCCGGGCTCTGGAGCCGGTCCCGCTGGACCGAGTGGTGCTGGGAGCCCGCAGCAGGCAGAGCCTCCGCTGGGCCGGAGCGGAGCGGTTCACCAGCGGGCTGCTGGAGCTCTGCGGCCCGGGACAGTGGCTGCTGGCCCGGCGGGGAGACCCGCTGCTGCTGCCCCGACACCCGCTGCTGGGAGAAGACCCGGGACAGGTGGAGCTGCTGGTGTTGGACTGCAGTCCTGTAACTCAGGGCCGGATTACGGCCGACACCGCTCTGCTTCTGACCGACTGCTGGGACCCAGCGGACGCGGCTGGCGGCGGCGCCACCCAGCCGCCTCTCAGACTGGGCGTGGACGCCCCCCTCCCACCGCTGTGCGTGTCGGACTTCGCTCACTACGCCGACGGCCTGGGCGGCGGGCGCTCTCTACTGGACAACCGCAGGCTGCTGGACTCGGGGTTCTCGGGCGTCCTGCGGGCTCTGGAGGGCCGTGTGGACGTCCGCGTGGTGGACACGCGGCGGTGGATCGGCGTCGGAGGGCACCGCGGCGGCAGCGTGGACCTCGGCGGCAGCGTGGACATCGACAGCTGCGTGGACATCGACAGCTGCGTGTTTGTGAGCAAACAGCTGTTGCTCCGGCTCGGCCTGTTCAACCACGAGTGGGTTAAAGTATCGCGGCCCGGCGCAGCCTCCAGACCGGAGAGTGAGGCTCGGGGGGGCGCCTGCAGACAGCGGCTGGTCTCGGTGCGCGTGGTGGATTTCAGCCAGAGTCCAGACCTGCAGGACCAGGACGAAGTGGGCTTCATATCGCCGGCTCTGTGGTTCAACATGGCCGACGGAGACGTGATGCCCGTCAACGGCTGCACGCTCAGGATCAAGAGGTGGCGAGCGTCTGCTCTGCCGGCGCTGGCCGGCGTGCATCGCTCCGACAGTTTCTGCCGCTCGGCGTCTCCGCCGTACGCCAGCGAGCTCCACGTCCAGCCGGTGGCGTCGCCGCTGTACAGCGGCCTCGGTTGCTACGACAACCTGCTGTCTGAGCACTTTAGCACGCCCAGACTGGTTGCCCAGGGAGACGTCCTGTCGGTTCCAGCTGCTAACCATCCAGACCTGCTGGAGAACAACTCAGAGGGGATACACAGgTGTCCAGTGCTGTTCTTCAGAGTTCAGAAGGTGTGTTcatctgcagagagagaagagggacaggaggaggaggctcACCTGGCCGACAGACTGCACACCTCACTCTACATGACGGCGTCTGCCGTTAGCAGCCCCGTCCCCTGCTGCCTCTATGAGGACAGCACGTCTCTGTGGAGCGCTCTGTCTCCTCCGGGCCTGGTCCAGACCGTGGAGCAGCTCTGCAGCATTATCCTGCCTCACCTGCAGCACAGCAGCCTGTCCGGTTGCACCGTCCTGCTCCACGGCCCGGCAGGAAGTGGTAAAGTGACGGCGGTCAGCGCGGCGAGCCGCAGACTCAACCTCCACCTGCTCAAGgtggacagtgtgagtgtgtgtgcagacacCCCTGCAGCCTCGGAGGTGAAGCTGAGCGCTGTGTTCCAGCGGGCCGCGGTGCTGCAGCCCTGCGTCCTGCTGCTCAGGAACCTGCAGCTTCTGCTGCGGCCTCGCGGCGGCCATGGCCAGGAGGACGCCAGGGTCCAGGCGGCGCTCTGCCAGCTGCTCCACAGCGCCCCCAGCAGtgtggtggtggtggcgaCGGTCTGCAGGCCCCGGGAGCTGTCTGCGGGGGTCGCGGCGGCCTTTGTCCACCAGGTGGCGCTGGAGAGTCCCACCGAGGAGCAGCGGTGTTCCGTGCTGCTCAGCCTGAGCCGAGAGCTTCCCCTGGGGAGAGACGTGGACCTGGAGAGGCTGTCCAGACTCACCGCGgGCTTTGTGTTGGGCGATCTGAGAGCTCTGCTGGTGGAGGCGGGCCGAGCTGCCCGCAGGAGGCTGGTTGACACCTGtgtcgGCTGGCGGGAGGAGGATCTGTGCTCCAGTGGAGTGAGCGTCCTGAACCAGGACTTCCTCTCGGCCCTGGAGACTCTGCAGGACGCCCAGTCGGCCGCCATCGGCGCCCCAAAGatcCCTTCAGTGCGCTGGGAGGACGTTGGCGGTCTGCAGCAGGTGAAGAAAGAGATCCTGGACACGGTGCAGCTTCCGCTGCAGCGGCCCGAGCTGCTGTCCCTGGGTCTGAACCGCACCGGCGTCCTGCTGTACGGGCCGCCGGGCACCGGGAAGACGCTGCTGGCCAAAGCGGTGGCCACCGAGTGCTCCATGACCTTCCTCAGtgtcaaAGGTCCGGAGCTCATCAACATGTACGTGGGTCAGAGCGAGGAGAACATCAGAGAAGtgttCTGCAGAGCGCGCTCAGCAGCCCCGTGTGTGGTCTTCTTCGATGAGCTGGACTCTCTGGCTCCCAGCAGGGGGCGTAGCGGAGACTCTGGGGGGGTGATGGACAGAGTGGTGTCCCAGCTGCTGGCCGAGCTCGACGCTCTGCACTCGGCTGCCGGCGTGTTTGTGATCGGAGCCACCAACCGGCCGGACCTGCTGGACCAATCACTGCTGAGGCCTGGCAGGTTTGATAAGCTGGTGTACGTCGGGATCAACGTGGACCGGGAGTCCCAGCTGCAGGTTCTGCAGGCCATCCTCAGGAAGTTCCAGGTGGACTCTGCGGTGGACCTGCAGCAGGTGCTGGAGCGCTGCCCCGATCACATGACCGGCGCCGACCTGTACGCTCTGTGTTCAGACGCCATGACGGCTGCCATCAAGAGGAAGATCTCTCTCATCGACGGCggtcTGGACTCGGAGGACTCTCCTGTCCTGGTCTCCGTTGAGGATTTCTCTTCAGCGTTGGACAACTTCAAGCCGTCCGTTTCAGCCGAGGAGCTGCTGAGATACACAAACATTCAGCAGAAACTCGCTGCAAAGTAGAAACTGATGCTGATGACGATGTTCACTCTCCATATAATATACATAAAGACTCCCACAAAGGGCAAATTTAAAGGGCCAGTCACATCTGAAAAATCTATATTGTAAAATACTGTGAATGTAAATGTTGTACACAAGAAGTTAATTTATAAAATTGTGAAATGTAATTAATAAATCCAAAAGTTAATGTTGGATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640723.1 lncRNA upstream 70494 4336864 ~ 4338765 (+) True LOC120568418
TU1903 lncRNA upstream 72066 4336702 ~ 4337193 (+) False LOC120568418
TU1902 lncRNA upstream 73668 4335367 ~ 4335591 (+) True G1367
TU1898 lncRNA upstream 154573 4254343 ~ 4254686 (+) True G1363
TU1887 lncRNA upstream 157786 4250491 ~ 4251473 (+) False G1361
TU1925 lncRNA downstream 7698 4443784 ~ 4450576 (+) True G1385
TU2064 lncRNA downstream 33720 4469806 ~ 4470109 (+) True G1489
TU2066 lncRNA downstream 33720 4469806 ~ 4470109 (+) False G1489
TU2074 lncRNA downstream 84086 4520172 ~ 4520486 (+) True G1493
XR_005639997.1 lncRNA downstream 272118 4708204 ~ 4710879 (+) True LOC120563678
XM_039815719.1 mRNA upstream 76359 4312607 ~ 4332900 (+) True tpcn3
XM_039815663.1 mRNA upstream 139788 4253119 ~ 4269471 (+) True LOC120568266
XM_039815757.1 mRNA upstream 161327 4244258 ~ 4247932 (+) True pgap4
XM_039806858.1 mRNA upstream 594689 3792746 ~ 3814570 (+) True LOC120562910
XM_039808845.1 mRNA upstream 753617 3647024 ~ 3655642 (+) True psen2
XM_039815752.1 mRNA downstream 62927 4499013 ~ 4517076 (+) True rcor3
XM_039815739.1 mRNA downstream 85013 4521099 ~ 4538660 (+) True traf5
XM_039815731.1 mRNA downstream 85893 4521979 ~ 4538660 (+) False traf5
XM_039807798.1 mRNA downstream 347267 4783353 ~ 4806707 (+) False zgc:172076
XM_039807783.1 mRNA downstream 359223 4795309 ~ 4806707 (+) False zgc:172076
TU1635 other upstream 910155 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 929129 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1149501 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 1252121 3128089 ~ 3157138 (+) True LOC120557752
TU2062 other downstream 19121 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 541697 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 598479 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 781982 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 799260 5235346 ~ 5327757 (+) False LOC120563544

Expression Profile