RNA id: TU2062


Basic Information

Item Value
RNA id TU2062
length 5198
RNA type TUCP
GC content 0.42
exon number 1
gene id G1487
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4455207 ~ 4460404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTACAAAGTATGAAATCATTTATTGTTGACATTTGATATGATTTTCTTATAAATACTCTTTGTGCAGATACAGTTTTCATTCGTGACAGCGAAGAACAGAAATAagaatctatatatatatatctgtggtTACTACAAGTTTCCTCTCTAGCGTTTCCTCCAAACTCCCAGAACAGTGCATACATGACATTGATAAAGCCTAAAACCATTTTATCATGGCGGTGCTCTTCATGCACAGACCGCAGTAGTTACATACGTAAAGATTAGTCCTCGGAGATATTTAAGTACCAAGGCTTCAGAAACGAGTTTCCGACACCAGCGTCATGCAGACAACCAAAGTGCATCAGCGGCGATACCGGCGGTGCTCGTGGGACGGCGTGAAACACACAAAGTACCACAAACAGTGctttaaattcacttttttgaTCACTAGCCAACATGGCTAGTGAATTTTTTAAGTTACTAGCCAATCAGCTTTTCCACTAGccaaatgttttagtttttttcccccccaagccaaacacacaaaaccaccCAAACTTCTTGGCGGAAAACAGCAGAGGTGGGAGTAAGTCACATTTGTGCAAGTCGCACGCAAGTCTCAAGTCCCTGTGGTGAGAATCAAGACAGTCGAGTTGAGTCCCTGCTACAagtcaagcaagtctcaagtcaagtcatGCAAAAATTGtccgttaacgttagctaaaagaCACATTCACGTAGCTACCGTTGTTTGTGTTGCTTGATATGACGGATTAAGTTGTATGTTGTGGTTGTCGTCTTCGTAATTTTGGAGTTGCAATCCTTGCACACTgctgttctttttttacagcaaGCACTCCTTAAATCCGAATTTCACTATTAACTTTTAACATTActtcttaaaggtccagtgtgtaacatgtttagttgttgattatcaaaatctgtttcccattcacaaacttgtcctttttcatgaatatttacctccaccatccaTTCagagtattccttttggcttgaaattttacatttgcatttgcatgaactggggtagacgctccatattcatgctccatcttgaaatacgttagccggtaagggacatacaggacatactgctccacctttcgcattttcgctgtcacatgataaactcacagatGCTGCTAATagtgctaatgggtatcgtagcttccccaCCGGCCCTTTTTGAAGTGTGAaagctaccgtagctgtaatacgtactttgagcTACGTGACGCAAGGGGGTTGATTgcgagatgggagaaattcccacacattggacctttaataccTTAAAAAAGAATAGGGCTTGGCGGTTACATTAATTAAAGTCAAGTTCTTTCAAGTCATCTGtctcaagtcaaagtcaagtcgagtcaTTTAGTAATGAAAGTCAAATTTGCATCTCGAGTCAAGTCGTGCGACTCGAATCCCCCACCTCTGGAAAACAGACCAATCTGGAAACACTTTCATCTCAGGCCAAATTGGCTTGTAACTTTACAATGTTACCCGCCAACATTGTTACATGCATTTGGTGGGTTGGCGGGTGTCAATTTAAAGCTCTGATCATAAACAACGACTCGTCTCTCAGAGCAAACAGCATACACGGCAATAATTGCATATTATGACGCTATATTATATCACACGTACACAGGATACACAAGATGCCAAAGCCAAGACAAACGTATAGCTTCCTTCTCAGGGTGACTAGGTTACATTTCCTTTGATGCTTTATTTGTACTAATCAGAGTCGACTGTATGGAGAGgggaagtccctccccttccggtggacacCATGGGACCTTAGTTCGGAGCTCAGTGAAATACATCTCTCGTTTTGCATACGTCACCTTGCTCGCTATAGctgaaaagcgacaaaaaacgttaacatttttaaaaagtggcttaaagcgacaaaaactttgaaaattcaGAGCTCACAGATTTGTCCACTCAGACATTCACGGACAAACGGTAAGAAGATGATGAAATTTACGACACACGGAGCTTCGCTATGCGGCTGCAGTTCCTCTAACGTCCACTAGATGCCACTACAAGGAAACACACTCCCCCTTTAAGGGCTGgccccacgatacgatattatcacgatTCTTAGTaaattattgcgattttaaacatatttagaCATTCTGGGATGtattcaaattatgtccccaaaggaaaaactttgtcaacatctgttatCTACGAAGATGCTGCTCCATTAGTGGACTGAAaaagttattgtttttattattctagtacaaaaaagttaaattctaATGTGCAATTTATTTTGTTACATCATAGTTTGATTGGCCGTCTGACTGGGGTGATCTAATCTTAGATGTAGCGAGAGCAATCAAGTTCCCAGGGTTGGTTATGCCATgaaaatataataaaagattgatacttggcgtccgtgtatcgatacagtTTTGCCAGGGAATATATATcgtgatactatgctgtatcgatttatATTTCCCCACCCCTAACCCCTTTCACACAGAGACTCTGCAATAGCGTCGCAACAAAGGTCTGCCGTTATGAAGGTAGCTTGGTTACTGCAAGTTCCTCCGAAGCATAACAACCAGTGACTTCTGGAGAGCAAACAGCGCCCGGCACGCCAGCAGCAATCAAAATCACAACAAAGAGGCAAAAGTCTGACGGACAGAAACAGAGGCACTGAATGACTTTCACCTCCAACACAGACACGTGACCTACGTACGGTGCCAATGAGCCACAATTATTTGTCTTCTGTACAGCTGAGTTAAAACATATTCCTCTTGAATTCAGATGCATTTAGGCCACCGCAAATATCAGAATTATTACCATCAAAAATGTGATCTTTGACACTGAAGCATTCACATTGCTGTTGTTTGAATTTGGACGTGTTAACCCCATGGGCTTCATCCAGATCTGAAGCAACATGGGAACATGCATGCACtgattttttattaaaactaaaacaaaaaaatccagaCTAATGTTGAGCTCTGTGCAGGAATACAACATCGGACACATTAAGGGATTCATTGTCACTGTGCTGCATCAATTTGTTCTCATTCACTCTGGATATACAAACACTACCGATCCCTAACAAGCAAAGACTTCTCAGTGAAATCTGAACACAGTGTTTAGTCTGCATGAAGTTGGGGACATTCTGCTGCCATAAAACCCACCAAGCGAACCACCGAACTGTTGACCATCAGCTGAAAGTCTGAAGTACAGTGTCCTTTAACGTTCAGCAGTTAAACATCCGTCTTTTGATTAATGCTCTGAACAACCAACTGCAGAGCGTTGGCTTTGATATGTTGTCATGCACTTGCTCAATTCTCAAACAGCCCTATCGGAAAAACCAACCAATGATACGCGGAAGTATCGACGTCATGGACGCCTCTCTCAGTTTGAGATCCATCTGTCCACTGGAATCACAGAGATCTGTCTCCTGGATTCTCCTTGAACTTTATTTAGAAGTTTGAAgaccttttttttcaatgaagTGTGAAGGCAGCCAATGAAAGCGGACCCTTCAGGATCTGGTAGAGCTAGCGATGGGTCAAAGCCACCCAAATAAGGCGGGTTCACACCAGGGTGGAAAAAATATTCAAGTTGCGCCATTTGCATCATAATATTTGGATAATTTGCGTTGGATCGCATTACCTGCCAGTGTAGAGCCGTAGGCACCAACAACGTTTCTTTACGTCATCAATAtggcaaaagaaaacaacattaTTGCTGTACAAGATACGTTGGTAAATCAAATGGCATTATGTCTAGATTAAAAATATCATCCAGCAGAGCTTGGTGATGTTTACTGCCTTCTCTAGGAAGTAAACATTTTACATCTGGATGATGATGCCACTTCCAGCGCTACTTGAAGTACAtattttgcaattttttttattgcaataaCCGGATAAAAAAGGCAACACGCTCAAGTTCAAATGTTTTGCGCCATTTGCACCGTGTGCCGCGTCTTTGCATTGACTTTGTATGTAATTTAAACGCCATTAAAACACGGTTTCCTTCATCACAGTGCCAAAGTCTTGAAGAACAACATTAAAGCCATCTTTTATATTATTGCCAAAATCATATGAAGGTCTAAACCTTCCTGAGAAACAAAGGTGCCATGACTGTCATGACTTCATATATATAGTCTCCGTTCAAAGTGAAAATCCGCCTTATCCTCAGTCCAGTTTGTAATGTCTCGCAGGGCGATGCTACGAACGTAACAAAGTGCTTTTGTGCGGGATCATCGTCCTCTTAACCGCCATCAGCTCAGCTTCACACTGCGGAATGTGGATGCTGAAATGTGTCGGGTCAGACTCCACACGCAGATTAACAGAAGCTGTCCCCATCGGAGTCGGGCGACGGAGGCCTGGAGATCTCGAAGAAAGAACCCGACGACTTCCTGGATTTGAGAAGTCGCAGCATCTCAGCCATCTGAGTCTCCAGTGCCGCCATGCGACTGTTCAGACCTCTGATGTCTCCTCTCAGTTCCTGTTTCAGCTCGAGGAAAGACGCCTGAATGCTCTGCTCCGGTATCGCGCAGAAGACCTTCTTCTCGTCCGACTGGACCGGGCTTTGCTCCTGAGGTGTTCGGGCGTCTCCGACATTGTCCAAGCGGAGTTCGCTCTTCGTGATGCCGCTGTCACAGGAGTCTGTTTTCTTAAGGGACATCTCACCGTGAGACTTAGTTCTGTCGGGCAGCGTCTCCATGGACTCGGCCTTGGAGACGCTGCTCCACGACTCTGCCTTCACCACCGATTCCTTGAATCTCCCCCAGCCTTTAGCTTTGGCCGGCTCTGCCGATTTGCAGCCGATCAGGTTTCCGTTTTGCACGGCGGTAGCGTGGAGCATGACTCGGCTGGACGTCCGGGAGGAAGCAACGGATGTCGAGGATGTGGTTGCCGTGGCTTGGTTCTCCGTCACCATGTCTATGCTGGTGGAGGCCAGGACCACCGGACCTCTGGGCCTCTCCAGGGGAACCACACCCGTCTCCACATCACCGGCATCGTGATCGACGTGCTCGGTGGCGAGCCGTGCCTCCCGCTGCTGCCTGAAGCGCTGGAAGAGGCGTCGCACCGGGTGATCCGGAGGCAGGTTGAGAGGAGCCTCGTTCTTCCTCTTCAACATCTCTTCTTCCTCACGTTTCACATCACTGATCTTCCGGAAGACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1925 lncRNA upstream 4631 4443784 ~ 4450576 (+) True G1385
TU1921 lncRNA upstream 30953 4420462 ~ 4424254 (+) True G1383
XR_005640723.1 lncRNA upstream 116442 4336864 ~ 4338765 (+) True LOC120568418
TU1903 lncRNA upstream 118014 4336702 ~ 4337193 (+) False LOC120568418
TU1902 lncRNA upstream 119616 4335367 ~ 4335591 (+) True G1367
TU2064 lncRNA downstream 9402 4469806 ~ 4470109 (+) True G1489
TU2066 lncRNA downstream 9402 4469806 ~ 4470109 (+) False G1489
TU2074 lncRNA downstream 59768 4520172 ~ 4520486 (+) True G1493
XR_005639997.1 lncRNA downstream 247800 4708204 ~ 4710879 (+) True LOC120563678
TU2151 lncRNA downstream 248876 4709280 ~ 4709697 (+) True G1562
XM_039815639.1 mRNA upstream 19121 4408438 ~ 4436086 (+) True pex6
XM_039815632.1 mRNA upstream 19121 4409259 ~ 4436086 (+) False pex6
XM_039815719.1 mRNA upstream 122307 4312607 ~ 4332900 (+) True tpcn3
XM_039815663.1 mRNA upstream 185736 4253119 ~ 4269471 (+) True LOC120568266
XM_039815757.1 mRNA upstream 207275 4244258 ~ 4247932 (+) True pgap4
XM_039815752.1 mRNA downstream 38609 4499013 ~ 4517076 (+) True rcor3
XM_039815739.1 mRNA downstream 60695 4521099 ~ 4538660 (+) True traf5
XM_039815731.1 mRNA downstream 61575 4521979 ~ 4538660 (+) False traf5
XM_039807798.1 mRNA downstream 322949 4783353 ~ 4806707 (+) False zgc:172076
XM_039807783.1 mRNA downstream 334905 4795309 ~ 4806707 (+) False zgc:172076
TU1916 other upstream 19183 4433376 ~ 4436024 (+) False pex6
TU1635 other upstream 956103 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 975077 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1195449 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 1298069 3128089 ~ 3157138 (+) True LOC120557752
TU2210 other downstream 517379 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 574161 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 757664 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 774942 5235346 ~ 5327757 (+) False LOC120563544
TU2438 other downstream 912213 5372617 ~ 5374907 (+) True G1775

Expression Profile