RNA id: TU2151



Basic Information


Item Value
RNA id TU2151
length 214
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G1562
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4709280 ~ 4709697 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ataaggtatctacatatctaatgttagtgatatgaggactgataaggtatctacatatctaatgttagtgatatgaggatgataaggtatctacatatctaatgttagtgatatgaggacagataaggtatctacatatctaatgttagtgatatgaggatgataaggtatctacatatctaatgttagtgatatgaggacagataaggtatct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2074 lncRNA upstream 188794 4520172 ~ 4520486 (+) True G1493
TU2064 lncRNA upstream 239171 4469806 ~ 4470109 (+) True G1489
TU2066 lncRNA upstream 239171 4469806 ~ 4470109 (+) False G1489
TU1925 lncRNA upstream 258704 4443784 ~ 4450576 (+) True G1385
TU1921 lncRNA upstream 285026 4420462 ~ 4424254 (+) True G1383
TU2170 lncRNA downstream 112042 4821739 ~ 4828356 (+) True G1578
TU2171 lncRNA downstream 112042 4821739 ~ 4837421 (+) False G1578
TU2176 lncRNA downstream 128399 4838096 ~ 4843291 (+) True G1582
XR_005640003.1 lncRNA downstream 314333 5024030 ~ 5024922 (+) True LOC120563689
TU2205 lncRNA downstream 324868 5034565 ~ 5036535 (+) False G1600
XM_039815739.1 mRNA upstream 170620 4521099 ~ 4538660 (+) True traf5
XM_039815731.1 mRNA upstream 170620 4521979 ~ 4538660 (+) False traf5
XM_039815752.1 mRNA upstream 192204 4499013 ~ 4517076 (+) True rcor3
XM_039815639.1 mRNA upstream 273194 4408438 ~ 4436086 (+) True pex6
XM_039807798.1 mRNA downstream 73656 4783353 ~ 4806707 (+) False zgc:172076
XM_039807783.1 mRNA downstream 85612 4795309 ~ 4806707 (+) False zgc:172076
XM_039807791.1 mRNA downstream 85612 4795309 ~ 4806707 (+) False zgc:172076
XM_039807807.1 mRNA downstream 85671 4795368 ~ 4806707 (+) False zgc:172076
XM_039807822.1 mRNA downstream 90034 4799731 ~ 4806707 (+) True zgc:172076
TU2062 other upstream 248876 4455207 ~ 4460404 (+) True G1487
TU1916 other upstream 273256 4433376 ~ 4436024 (+) False pex6
TU1635 other upstream 1210176 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 1229150 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1449522 3255917 ~ 3259758 (+) False dzank1
TU2210 other downstream 268086 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 324868 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 508371 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 525649 5235346 ~ 5327757 (+) False LOC120563544
TU2438 other downstream 662920 5372617 ~ 5374907 (+) True G1775

Expression Profile