RNA id: XM_039815663.1


Basic Information

Item Value
RNA id XM_039815663.1
length 4091
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC120568266
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4253119 ~ 4269471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAAACAGTAGAAACGTCAGCGGCAGTAGATCGTTCAGAGAGTGTTTGGGCGTAGTTTCCGGTCTTTAATGTGGACTAAAACGGGTTTAATGTGCTGAAAGCTCGGAAAAGCTCGAGTCCAAGAGTGCTACAAAAAATGACTCTcttgaacccagctgtgtgtccatcaAGAGCCACCGGTCCATGGATCCACCTTTAGTGTTTAAAGGACAGCTTCCTGCGTACACTCATGGATGTTGAAGGAACTTCAGGGAACCGAGGagcttcctctcctcacactgAAGCTGAAACTCAGAGTAGAGCAGGAAGCCCAGCAGTCACCGCCCAGCATGGAAGTGTCGTCAGCTCACCTCAGTTTACAGATGTCCATGTGGGAGGGAATATAACGCTTAATGTCAGCAACACATTTGtCACGTCTCCTGACAGGACAGATGAGACGAAAGCCGTTTCTCCCAAAACCGaagTGGATGCCAGTGGTGTTGAAGAAACTAAAGACGGGATTGTTCCAGTACCAAAGCCACCACGACACATCTCATATTACCAACAAAAGCTTCAGCCAAACCTCCAGAATGAGTTTTTGTGTGCAGAAGAGGGGTGGGCACAAAATAAAGATGGGCGACCTCTGGATGATATCTACACAGATCTGTACATCAAAGCTACTGGTGATgtacacatcaacacacagcaTGAGGTCAGGCAGATTGAGACAGTGAAGCcaacagatacagagacagcaATTACACCTTGTGACATGTTCAAACACCCCTCTGTAAAAAACAGACCCATAAGAACAGTGCTTACCAATGGAATCGCAGGAATTGGAAAAACATTTCTTGTCCACAAGTTTGTGTTGGACTGGGCTGAAGGAAGAGCCAATCAAGATGTGCATCTCGTTTTCCCCTTCACCTTCCGCCAGCTGAATTTAAAGAAGGGGGAAAAGTGGTGTTTGTCAGAGCTCATTCATGAATGTATCTGGGAGACCAGAGACATCAAAGAAGAAGCTCTTAATCACATCTTTACAGCTCTGCAGTCATCAGGAAACACCAACTTTGACAAGAGTGAATTCAaacttctgtttgttttggatgGACTGGATGAGAGCCGCCTTGATCTGGACTGCTCCACCAATAAAAACCAGACAGTTAAAATTGATGTGACAGCGCCGACCTCAGTGGATGAGCTGCTGACGAACCTCATCAAGAAgaaactgcttccctctgctcgcatctggataaccacacgacctgcagcatCCAATCAGATCCATTCTGATTTTGTAGACATcatgacagaggtcagaggattcactgacccacagaaggaggagtactttaGAAAGAGATTCACAGATCAGGAGCgggccagcagaatcatctcccacatcaagacatcacgaagcctccacattatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacatgttgaagaccagagagggaggagagctgcccaagaccctgactgagatgtatgCAGAATTCCTGGTGTTTCAGATTCATCAGACAAAAGAGAAGTATGACCCAGAACAGTGCATTCAGTACATTGAGTCATTAGCAAAACTGGCTTACCATCAGTTGGAAAagggcaacctgatcttctacgAGAAAGATCTAGAAGAGACTGGCATTGATGTCAGTGGAGCCTCGGTGtgctcaggagtgttcacagagatcttcaaAGAGCAACGTGGGAGGaagaatgataaaaaaaagatgtttagcTTCATCCATCTGactgttcaggagtttctggctgctttTCATGTAGCGAGTGCAGTCATTAACAGAAATGAGAATGTGATGTTTGGGCAAAGTATCTTCAAAAAAGTGTGGGAAGTTTTCAGCCGAACATCTACGACAGAGGTCCACAGTTTTGCTATTGACAAGGCCTTACACAGTCCAAAcggacacctggacttgttcctccgattcctcctgggtctttcccggcagaccaatcagattgtcctTGAAGACCTGCTGGCTCAGACAGGATCTAGCTCAGAGACCAATCAGGAAACAGTCAActacatcaagaagaagatcagtgagaatctgtctgcagagaaaagcatcaatctgttccactgtttgaatgaactgaatgatcatTCTCTAGTGGAAGAGATCCAACAGTACCtgagttcaggaagtctctccGCACATacactgtctcctgctcagtggtcagctctgggcttcatcttactgtcatcagaaaacgatctggacgtgtttgacctgaagaaatactctgcttcagaggatGTTTTTaggaggctgctgccagtggtcaaaacCTCCAAAAAAGCTCTgctgagtggctgtaacctgtcggagagaagctgtgaagatctgtcctcagttctcagcttcgagtcctctagtctgagagagctggaccttaGTAACAACGACctgaaggattcaggagtgaagctgatcTCTGCTGGACTAAAGAGTCAAAACTGTACACTGGAGACACTCAGtctgtcaggctgtctgatcacAGAGGAAGGCTGTACTTCTCTGTCCTCAGCTCTcagctccaacccctcccatctgagagtgcttgacctgagctacaatcatccaggagactccACAGTGAAGCTGCTGTCTGCTGGACTGGAGAATCCACACTGGAGACTTGACACTCTCAGGGTGGATCATTGTGGAGAGCAGAGGCTGAAACCTGGTCTGAAGAAGTattcctgtgaacttacactggacacaaacacagtgaacagagacctcaaactgtctgacaacaacaggaaagtGACAAGGGTGAATGAGGATCAGCCATATcttgatcatccagagaggtttgaccgctgttctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtcgagAGGACGggacatgtttttatttcagtgagttacagaggaatccgcaggagaggagacagtgatgactgtgtgtttggataTAGTGATCAGTCCTGGTGTCTGGAGTGCTCTTATATGTATGGTTACACTGTCATTCACAACAAGAGAAGAACAGACGTCTCCTCCTTCGCCACTCTCTCTgatagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactgaaCCTCTTTACCCTGGGTTTGGGTTAGGAggtggttcctcagtgtctctgtgttctctgtaggacggagagtctcctcctgtgaacagaaacactcacactgctgaccaacacacacaatctcttTGTCAATCAAACCACCTCAAATTTACAAGAAAACAATGAATATTAAAAATGACTCACTGCATGTCCATGGTTTAAAATACctttaaatatgttttcattCAGGTTTTTGGGGCGTTTCTGGGAAAACCttttactacatttatttgatactttagttactttgcagattcagattattaatacaaaaataaacaaatacatgatGCATTATTATGGATAAAGATGAACGGTATTGGTTAAATTCACATGTTACCCAGCAGGTTATAAAGTCATTAAATCAAGCTCCACCTTTTTAATCTTGACAATGTTCAGAAAGCTGCTGTCCATTGGTTTAGATGGTTTTGCTTCCAGCTGGCAGCCAGTCAGTGTGAGCTGTAAACATAGCACTcgttttttaaactgaaatgggtgcgttgaacaccccgcgctctgcctttttattaccacaggtttacagacacgtctctgctgattgggtatcacctgggaCATGGCCTATAAGCGAGAGACAcgcccaccaaacgagagaaaacctAACTCAACACAGTTTGACACCGATCAGAGGAAACATGTCGTTCAACCAGGAAACCGTAAAGGTGCCCCTGATGTCTGTATTAGAGTTTAATCTGAGGATTGTGAAAATGGGATTCTGTAAAACACGCTTGTTAAATTACTTTTATTCCAATTATATTGAATGTAATAAGTTGAAAGATTTaataaagagaaataaatattgTACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1889 lncRNA upstream 1646 4248069 ~ 4251473 (+) True G1361
TU1887 lncRNA upstream 1646 4250491 ~ 4251473 (+) False G1361
TU1884 lncRNA upstream 13381 4239243 ~ 4239738 (+) True G1360
TU1885 lncRNA upstream 13381 4239509 ~ 4239738 (+) False G1360
TU1845 lncRNA upstream 134953 3883301 ~ 4118166 (+) True G1324
TU1902 lncRNA downstream 65896 4335367 ~ 4335591 (+) True G1367
TU1903 lncRNA downstream 67231 4336702 ~ 4337193 (+) False LOC120568418
XR_005640723.1 lncRNA downstream 67393 4336864 ~ 4338765 (+) True LOC120568418
TU1921 lncRNA downstream 150991 4420462 ~ 4424254 (+) True G1383
TU1925 lncRNA downstream 174313 4443784 ~ 4450576 (+) True G1385
XM_039815757.1 mRNA upstream 5187 4244258 ~ 4247932 (+) True pgap4
XM_039806858.1 mRNA upstream 438549 3792746 ~ 3814570 (+) True LOC120562910
XM_039808845.1 mRNA upstream 597477 3647024 ~ 3655642 (+) True psen2
XM_039805718.1 mRNA upstream 685109 3564722 ~ 3568010 (+) True LOC120562172
XM_039794067.1 mRNA upstream 763109 3488343 ~ 3490010 (+) True LOC120555395
XM_039815719.1 mRNA downstream 43136 4312607 ~ 4332900 (+) True tpcn3
XM_039815639.1 mRNA downstream 138967 4408438 ~ 4436086 (+) True pex6
XM_039815632.1 mRNA downstream 139788 4409259 ~ 4436086 (+) False pex6
XM_039815752.1 mRNA downstream 229542 4499013 ~ 4517076 (+) True rcor3
XM_039815739.1 mRNA downstream 251628 4521099 ~ 4538660 (+) True traf5
TU1635 other upstream 754015 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 772989 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 993361 3255917 ~ 3259758 (+) False dzank1
XR_005639016.1 other upstream 1095981 3128089 ~ 3157138 (+) True LOC120557752
TU1916 other downstream 163905 4433376 ~ 4436024 (+) False pex6
TU2062 other downstream 185736 4455207 ~ 4460404 (+) True G1487
TU2210 other downstream 708312 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 765094 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 948597 5218068 ~ 5222744 (+) True G1756

Expression Profile