RNA id: XR_005639997.1


Basic Information

Item Value
RNA id XR_005639997.1
length 436
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id LOC120563678
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4708204 ~ 4710879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGATCTGATTGGCTTGTTTTTGTCACGTTTTCTGATCTAATCAGCCCAGACCATCAAGTACAAGTCTAACATGTGAGACAGCTGGTTTTCCTCCTCCTGATCAGACATGTTAGGCAACTCAGCTAGGCCACCTGACCGAACAGCTGAGACAGCCAGGTTAAATCAAACACTCCTGGAAGGGAAGGAACAGCCTCCTCCAGTCACTGCCTTCACCGCCACTCTGCCTCCAGTCAGCTGGCTTCTCCATCCAGTCCCTCCCTGGCGGTTCCCTGCTCCAGCCTGCTTCAGCTCTCACCTTCCTGCGCTTCAGTGCTTCCCCTGCGGATCCCTCAGCCCTGGTCTCCCCGAGCTCTCTGTCCCCCGTTCCAGTCTCCCAGTCTTCCCACTTCCCCATTCACTTCCCCATTTTTCCCTAATAAAATAACTTTTGCTGA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074 lncRNA upstream 187718 4520172 ~ 4520486 (+) True G1493
TU2064 lncRNA upstream 238095 4469806 ~ 4470109 (+) True G1489
TU2066 lncRNA upstream 238095 4469806 ~ 4470109 (+) False G1489
TU1925 lncRNA upstream 257628 4443784 ~ 4450576 (+) True G1385
TU1921 lncRNA upstream 283950 4420462 ~ 4424254 (+) True G1383
TU2170 lncRNA downstream 110860 4821739 ~ 4828356 (+) True G1578
TU2171 lncRNA downstream 110860 4821739 ~ 4837421 (+) False G1578
TU2176 lncRNA downstream 127217 4838096 ~ 4843291 (+) True G1582
XR_005640003.1 lncRNA downstream 313151 5024030 ~ 5024922 (+) True LOC120563689
TU2205 lncRNA downstream 323686 5034565 ~ 5036535 (+) False G1600
XM_039815739.1 mRNA upstream 169544 4521099 ~ 4538660 (+) True traf5
XM_039815731.1 mRNA upstream 169544 4521979 ~ 4538660 (+) False traf5
XM_039815752.1 mRNA upstream 191128 4499013 ~ 4517076 (+) True rcor3
XM_039815639.1 mRNA upstream 272118 4408438 ~ 4436086 (+) True pex6
XM_039815632.1 mRNA upstream 272118 4409259 ~ 4436086 (+) False pex6
XM_039807798.1 mRNA downstream 72474 4783353 ~ 4806707 (+) False zgc:172076
XM_039807783.1 mRNA downstream 84430 4795309 ~ 4806707 (+) False zgc:172076
XM_039807791.1 mRNA downstream 84430 4795309 ~ 4806707 (+) False zgc:172076
XM_039807807.1 mRNA downstream 84489 4795368 ~ 4806707 (+) False zgc:172076
XM_039807822.1 mRNA downstream 88852 4799731 ~ 4806707 (+) True zgc:172076
TU2062 other upstream 247800 4455207 ~ 4460404 (+) True G1487
TU1916 other upstream 272180 4433376 ~ 4436024 (+) False pex6
TU1635 other upstream 1209100 3497761 ~ 3499104 (+) True G1191
TU1593 other upstream 1228074 3468124 ~ 3480130 (+) True LOC120555387
TU1461 other upstream 1448446 3255917 ~ 3259758 (+) False dzank1
TU2210 other downstream 266904 4977783 ~ 5038714 (+) False G1600
TU2209 other downstream 323686 5034565 ~ 5038714 (+) True G1600
TU2407 other downstream 507189 5218068 ~ 5222744 (+) True G1756
TU2415 other downstream 524467 5235346 ~ 5327757 (+) False LOC120563544
TU2438 other downstream 661738 5372617 ~ 5374907 (+) True G1775

Expression Profile