RNA id: XM_039806171.1


Basic Information

Item Value
RNA id XM_039806171.1
length 1183
RNA type mRNA
GC content 0.63
exon number 6
gene id LOC120562457
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36685936 ~ 36703993 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGAGCGGAGACGGAAAGGCATCACTCCAAACAGTTCTCCCCCACCATCTCCCCCACGCTGTCCTCCATCACACAGCAAACTGCCTCTGACAACCAGAGGCTTCCTCCACACTCCACTCAGCCAGTCGCACTCAGCACTCAGGCACCAACCAGGTTCCCACCAGCTCTCCCCCCGGCCCGCAGGGCTCCCAGCCTGGACAGCAACCCTCTCTTCTTCTCATATGCCCccaccacacccccacccccccccccgcccgcCCAGCACACACGGCAAAGGCAACAAAGCAACCAAACACCCAACCCAcatgcagcaacagcaacagtcACAGtccatgcagcagcagcagcagcagcagcagctccacctGCAGAACCTACGCAACTCACACAACCAGCAACGCAGCAGCAGCAATTTGAATCGcagcagcagcagcagcagcagcaggcgaACTCACAGCAGATAAAGAACGAGCGGCTGATGGATCAGTGCGTCCAGAGCTCCTCTCAGCATCACGTCAAACAGGAAGCGGAGCAGCAGACGGAGCAGCAGCGAGTCACAGACCTCTACAACGACGCCTTGTTCAACTCTCTGCTGGACGACCCCTACCTGAGCCTGCAGCTCACGGGCAAATCCACCCAGCAGTTCAGCGCCGAGCACCAGGGCGACTGTCTGTCTCTGAACCACGGCGCTCTGAGCTGCGGCGGCTCCGATAACAACCAGTACCCCTCCGACAGCGGGGGCCACCTGGACCTGCAGGACCCCAGGGACCAGCAGCTCctcaaccaccagaaccagaACTACGGCGGCGGGGACGCACGGCACAACGTGCCCAACATCATCCTCACGGGGGACTCCCCTCCGGGTCTGTCTAAAGAGATCGCCAGCGCTCTGTCCCACGTGCCCGGCTTCGAGATGGACCCTTTCTCCCTGGACGACCCGCTGCGCATGGACCCGCTGGCTCTGGACATGCTGGACGGTGACCTGATGCTGGCTGACCCGGCTGTGGAGGACTCTTTCCGATCCGACCGGCTGAAGTGAccacctcccctccctccctccctcccgtccctccctccctcctctcccctccaccCTGCACTGCCGGCTCAGCTCGGTGGGGATCAGCCAAGGAGACGGACGCCCTTCAGCGCCACTTCACCGCACACTCACCActcccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105506 lncRNA upstream 18573 36666597 ~ 36667363 (+) True G78863
TU105505 lncRNA upstream 27630 36658008 ~ 36658306 (+) True G78862
TU105464 lncRNA upstream 42445 36578832 ~ 36643491 (+) False G78837
TU105468 lncRNA upstream 42445 36641833 ~ 36643491 (+) True G78837
TU105466 lncRNA upstream 42445 36642157 ~ 36643491 (+) False G78837
TU105444 lncRNA downstream 7107 36711100 ~ 36720480 (+) True G78825
TU105524 lncRNA downstream 48098 36752091 ~ 36774512 (+) True G78870
TU105525 lncRNA downstream 48098 36752091 ~ 36794092 (+) False G78870
TU105527 lncRNA downstream 49122 36753115 ~ 36758299 (+) True G78871
TU105529 lncRNA downstream 49122 36753115 ~ 36907622 (+) False G78871
XM_039806169.1 mRNA upstream 15907 36628901 ~ 36670029 (+) True LOC120562456
XM_039807340.1 mRNA upstream 144406 36528481 ~ 36541530 (+) True LOC120563185
XM_039807337.1 mRNA upstream 235732 36392257 ~ 36450204 (+) True LOC120563181
XM_039807338.1 mRNA upstream 302840 36368694 ~ 36383096 (+) True LOC120563182
XM_039807339.1 mRNA upstream 318911 36360700 ~ 36367025 (+) True nat16l
XM_039806172.1 mRNA downstream 56517 36760510 ~ 36792668 (+) True atp2c1
XM_039807332.1 mRNA downstream 105567 36809560 ~ 36829422 (+) False LOC120563178
XM_039807334.1 mRNA downstream 107875 36811868 ~ 36829422 (+) False LOC120563178
XM_039807333.1 mRNA downstream 112399 36816392 ~ 36829422 (+) True LOC120563178
XM_039805847.1 mRNA downstream 151426 36855419 ~ 36869334 (+) True aldh5a1
TU105394 other upstream 220706 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 251711 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 334941 36293987 ~ 36350995 (+) True G78772
TU105334 other upstream 544714 36137759 ~ 36141222 (+) False G78759
TU105193 other upstream 797764 35865842 ~ 35888172 (+) False LOC120562279
TU105558 other downstream 222719 36926712 ~ 36928871 (+) False G78888
TU105685 other downstream 727178 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 826697 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 826697 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 1174971 37878964 ~ 37883950 (+) False cmtm7

Expression Profile