RNA id: TU105563


Basic Information

Item Value
RNA id TU105563
length 369
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G78889
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37003583 ~ 37048033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtctgtgtgtctgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtctgtgtgtctgtgtgtgtgcgtgtgtgtgtctgtgtgtgcgtgtgtgtatgtgttagtgtgtgtgtgtctgtgtgtgtgttagtgagtgtgtgtgtgcatgtctgtgtgcgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105591 lncRNA upstream 23968 36913768 ~ 36980636 (+) True G78907
TU105562 lncRNA upstream 64650 36910015 ~ 36939954 (+) False G78888
TU105557 lncRNA upstream 66166 36926712 ~ 36938438 (+) False G78888
TU105561 lncRNA upstream 75323 36926712 ~ 36929281 (+) True G78888
TU105556 lncRNA upstream 75733 36839222 ~ 36928871 (+) False G78888
TU105638 lncRNA downstream 153158 37201191 ~ 37206248 (+) True G78947
TU105654 lncRNA downstream 247533 37295566 ~ 37379314 (+) True G78961
TU105689 lncRNA downstream 385313 37433346 ~ 37467880 (+) True G78990
TU105698 lncRNA downstream 444773 37492806 ~ 37494603 (+) True G78998
TU105699 lncRNA downstream 451857 37499890 ~ 37500110 (+) True G78999
XM_039806174.1 mRNA upstream 79777 36895389 ~ 36924827 (+) True pik3r4
XM_039805847.1 mRNA upstream 135270 36855419 ~ 36869334 (+) True aldh5a1
XM_039805848.1 mRNA upstream 135270 36855699 ~ 36869334 (+) False aldh5a1
XM_039807334.1 mRNA upstream 175182 36811868 ~ 36829422 (+) False LOC120563178
XM_039806544.1 mRNA downstream 276868 37324901 ~ 37326438 (+) True LOC120562694
XM_039805211.1 mRNA downstream 288038 37336071 ~ 37351571 (+) True LOC120561884
XM_039805209.1 mRNA downstream 306950 37354983 ~ 37359625 (+) True LOC120561883
XM_039805210.1 mRNA downstream 308284 37356317 ~ 37359625 (+) False LOC120561883
XM_039805208.1 mRNA downstream 308284 37356317 ~ 37359625 (+) False LOC120561883
TU105558 other upstream 75733 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 300739 36691393 ~ 36703865 (+) True LOC120562457
TU105394 other upstream 539374 36392252 ~ 36465230 (+) False LOC120563181
TU105393 other upstream 570379 36392252 ~ 36434225 (+) False LOC120563181
TU105369 other upstream 653609 36293987 ~ 36350995 (+) True G78772
TU105685 other downstream 383138 37431171 ~ 37432679 (+) True G78989
TU105717 other downstream 482657 37530690 ~ 37533069 (+) False G79007
TU105719 other downstream 482657 37530690 ~ 37533069 (+) True G79007
TU106195 other downstream 830931 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 1008383 38056416 ~ 38077649 (+) False nek11

Expression Profile