RNA id: TU106130


Basic Information

Item Value
RNA id TU106130
length 985
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G79284
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37733208 ~ 37797202 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGGTCACGTGATGACAGATTATTGATTCAAAAGGAACTTTACTGATAACAACTGAAGGACACAAACATCTGAACAGATATCAGCTGTTAATATTAATCATATTAAACTGAATTTCTTTgagctttggaaaaaaaaaagacattcaaCACCTGTCGACAAAGCAACGTTTGGTTTTTCTggaacaaaatttaaaaaataattgacaCTTTTgttcaatgtttctctctctccaaaaGGCTATAAAACtgactaaaacacccaaattcaatgaaagtggtGAACTGAGCCTTTATTTGAGCACCAGGATGGACACTTTATAAGTGTTGTGATATTTTATAGAGCAAATAATTAAATCGATAATGAAAGTAATCGTTTGTCGCAGCTCTTTTAACCCCAAATTAACTCCTAACGACACCAACAGGTTTCTCCTGAGGGAGCACAGAGGTCTCACTCTCAACCACCTGGAATCAgatttcatgttttcatcacCAAAACTGATTTTTATTGAAACTTTAAGAAGACAACGGCAGTGACatcattcagacacacacagtcacacacacagtcacacacacacacacacacacacacacacaaagtctcacacacagagagagagacacactcacacacacacagacagagtcacacacacagtctcacacacacacagtctcacacacacagtctcacacacacacacacacacacacacacacacacacacacacacacacacagagagagagacacacacacacagagtcacacagacagagtctcacacacacacacacagagtcacaaaCAGTCTCACACAAACAAAGtctcacacacaaagagacacacacacacacacagtcacacacagtcacacaggacagacacacacacacacacacagtcagtctcacacacacacacacacacacacaaagagacacacacacacacacacacacacacacacagagacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106131 lncRNA upstream 9005 37733208 ~ 37733727 (+) False G79284
TU106101 lncRNA upstream 97165 37607185 ~ 37645567 (+) True G79262
XR_005639871.1 lncRNA upstream 181946 37556675 ~ 37560786 (+) True LOC120562911
TU105725 lncRNA upstream 199187 37542905 ~ 37543545 (+) True G79011
TU105718 lncRNA upstream 209663 37531008 ~ 37533069 (+) False G79007
TU106162 lncRNA downstream 4987 37759235 ~ 37760174 (+) True G79297
TU106172 lncRNA downstream 17992 37772240 ~ 37775336 (+) True G79305
TU106178 lncRNA downstream 41412 37795660 ~ 37796216 (+) False G79309
TU106179 lncRNA downstream 41412 37795660 ~ 37872187 (+) True G79309
TU106180 lncRNA downstream 41412 37795660 ~ 37799078 (+) False G79309
XM_039806380.1 mRNA upstream 266 37734725 ~ 37742466 (+) True zgc:153896
XM_039804711.1 mRNA upstream 22703 37717368 ~ 37720029 (+) True LOC120561575
XM_039806183.1 mRNA upstream 32771 37706105 ~ 37709961 (+) True LOC120562469
XM_039804927.1 mRNA upstream 156594 37583123 ~ 37586138 (+) True LOC120561715
XM_039806179.1 mRNA upstream 162877 37578597 ~ 37579855 (+) True LOC120562465
XM_039804901.1 mRNA downstream 72641 37826889 ~ 37845714 (+) True LOC120561705
XM_039804902.1 mRNA downstream 72734 37826982 ~ 37845714 (+) False LOC120561705
XM_039804778.1 mRNA downstream 124668 37878916 ~ 37888006 (+) True cmtm7
XM_039806188.1 mRNA downstream 302168 38056416 ~ 38145804 (+) True nek11
XM_039806189.1 mRNA downstream 427987 38182235 ~ 38188763 (+) False LOC120562476
TU105717 other upstream 209663 37530690 ~ 37533069 (+) False G79007
TU105719 other upstream 209663 37530690 ~ 37533069 (+) True G79007
TU105685 other upstream 310053 37431171 ~ 37432679 (+) True G78989
TU105558 other upstream 813861 36926712 ~ 36928871 (+) False G78888
TU105437 other upstream 1038867 36691393 ~ 36703865 (+) True LOC120562457
TU106195 other downstream 124716 37878964 ~ 37883950 (+) False cmtm7
TU106210 other downstream 302168 38056416 ~ 38077649 (+) False nek11
TU106224 other downstream 333728 38087976 ~ 38145778 (+) False nek11
TU106244 other downstream 415806 38170054 ~ 38320607 (+) True G79351
TU106246 other downstream 415806 38170054 ~ 38320429 (+) False G79351

Expression Profile