RNA id: TU106276


Basic Information

Item Value
RNA id TU106276
length 2952
lncRNA type intronic
GC content 0.44
exon number 4
gene id G79370
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38405477 ~ 38412407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTGGTCTCTGCTCTCTGGCCGTGGCGGCAGCGAGACGGACCTCGGTGGCACTGGTGCGTGCGTGCCTGGCGTGGAACGTGTTGAGCGTGGCGGTTGGTCTGGGGGGCGTGGCCTATCTCTGCTGGCTGCTCGCTGACAGATCAGCTGACCGCTCCACCTCTCAGCTCATCTGTGACGACCTCCTCCAGTCAGGGTGCTGGCCTGTGCACCCACAGTTACAGCAAATGACGAAGACCTGCTACGAACAGATGAGGTGGCTGGATGTGAGTGTTTATGGACCTCTGGGCGCCCTGCTGGTTCTGCTCCTGCAGGTCTGTGTCGTCGTCACCGTCTGCGTGTTCTCCTGCAGAGCTCTCGCACGCCGCCACAGCTCCACCCCCATCAtgGTGGAGGTCGGTGACCGCGGCGCTCTGCTGTCCGGCAGCGACGTCTCTCTGCTGGGCAGCGAAGGAGAGGAAGCGTCCACGCTGCCTCCCAAGTCCCCGTGAGAGGGAAAACTACAGTAATCCTACAGCAGAGAGTACTCGCATACTGGGACTCGGCCTGTCATTGTAATCTGTAATCGTCTCTCCAgctgtttctctctttcatctGTTGTTAACAATCGTTTTCATGCTGCGCTGCATTCTGGGTCGTTTGGGGGCTTCACCTGCCCAAAGTTGGGACTGAGTTTAAAGGTGGAACAGATAATACTCTAGTGTTTATTTCAACAAGTGTAATTGTAGGCTACGTGACCACTGTCAGCGTCAAATCCACACTTTCACATTCAACTGTCTAtgggagcagccgtgcaatgcattctgtgAGCATCGTGTttcccgctcctcatttgcatgacgttgaatccagccaactttatgcaaatgaggagcggccggctcggctcgccgcctctcaaaatctgacggaaatcttttaaactgaccgttgtcaaatgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgagtgtgtgtgtgtccacgtgtctgtgtgtccctTGAAATAATGTGACtatagccctattcgcacgggataagtattacctggtgacctccagtcatttgtaataatcgcggaggttgtctgtgatcttaatcccgtgtgaatcggtcatgtctgtaatttgtaaagtaataattgccccgcaaatgacctaccatatttcgccgataatattagtcccgtgcgaatcggcatctctgtgatttggggtctaactggctgcgttgtcaattataaatgaaaagttttgacatcatatccgggggataatgtctgtaaatttgagtaaaatacagacttcagttatcccgtgtgaatgcgccagacgaaatacagacgtgtgggggtaatttctaaactacaagaggtccccaggtaatacttatcccgtgcgaatagggcttatgtatgaaaatgtgtgtaattccTAAACCCTTGCTCCAATTTTGATGTAAATACGGGCAAAATAAAGCTGAAAGTCTGCACTACAATTTCTTTTCAAATCCATTGTGTTAGTGCACAGGGCCAAAATCATGAAAATTGTGTCACTGTCCAAAATATTTCCGAACCTAACTGTATGTAtgctaagccaatctcctgtctaaaaTACTTCTCATATGTCTTGGGagtcaaactgtgaagaaataaacattataactttTGACAAAATATCTAAATTTTTTCCAAAACAGTCCAACGCTTTTGCCCTCATGACATTCACTAATGTTATGAACCGGGCTGTAATGTAGCCCTACAGGTAAGATATTCAGCatcagtcagcgtccactaaaagttctgttgttgccgctgacttattattagattattattctaagtgtctgacaacattatggaaaggatccctaaagagatagaccttttagttaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatcaccaaactccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagtgtgtatagagccagcatatctccaccagactccatggaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgttcatagagccagcatattttcaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactatcaataGATAGacctggctctatacacgctaaaagtcctgcttatttacatggagtctggtggagatatgctggctctatacacgctaaaagtagtgtgtgtgtgtgtgtcagtctgccTCCTACTCCCTGATCCTgtttctttaaataataaagGGAAGTGTTTGGATTCTTGGAAATTATGTTGTGGAGAGATAAACACGATGTGTTTAAGTGTAATCAGAGTAAACATAATCTAGTGGGCACTACTGACTTAACCcgtcaaaatgacaaaatgttgaATGTATGATTTTGTCAGAATATTGTTTAAGTTTTTgtaatttaaagctgcagtttTAACCTTAAAACCACAGTTTGGTTGTGGCATTTCATGTAAGATTtccttgtgtctctgtctcttttatgtgtaaataaagttaagtatgtatttttttaaatgttttatttattttgttgcttAAATGGCACACAGTTAATCGATTATTGCTGCTATATCATACACATAATAAAGCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106298 lncRNA upstream 24596 38380592 ~ 38380881 (+) True G79386
TU106295 lncRNA upstream 26265 38373827 ~ 38379212 (+) False G79384
TU106294 lncRNA upstream 29069 38373827 ~ 38376408 (+) True G79384
XR_005639905.1 lncRNA upstream 37628 38367119 ~ 38367849 (+) True LOC120563039
TU106271 lncRNA upstream 140200 38264735 ~ 38265277 (+) False G79367
TU106304 lncRNA downstream 40739 38453146 ~ 38453826 (+) True G79392
TU106281 lncRNA downstream 44236 38456643 ~ 38521817 (+) True G79373
TU106568 lncRNA downstream 143659 38556066 ~ 38556285 (+) True G79568
XR_005639903.1 lncRNA downstream 198852 38611259 ~ 38611869 (+) True LOC120563037
TU106607 lncRNA downstream 230141 38642548 ~ 38647914 (+) True LOC120563036
XM_039806193.1 mRNA upstream 99585 38301454 ~ 38305892 (+) True LOC120562481
XM_039807011.1 mRNA upstream 114154 38287737 ~ 38291323 (+) True LOC120563007
XM_039806192.1 mRNA upstream 135409 38268277 ~ 38270068 (+) True LOC120562479
XM_039807006.1 mRNA upstream 146442 38257203 ~ 38259035 (+) True LOC120563002
XM_039806189.1 mRNA upstream 216714 38182235 ~ 38188763 (+) False LOC120562476
XM_039806195.1 mRNA downstream 21567 38433974 ~ 38455559 (+) True cmtm6
XM_039806199.1 mRNA downstream 112797 38525204 ~ 38575568 (+) True tg
XM_039807024.1 mRNA downstream 169111 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA downstream 169111 38581518 ~ 38590896 (+) False LOC120563014
XM_039807004.1 mRNA downstream 181638 38594045 ~ 39098913 (+) True LOC120562999
TU106244 other upstream 84870 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 85048 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 101789 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 259699 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 327828 38056416 ~ 38077649 (+) False nek11
TU106301 other downstream 21586 38433993 ~ 38444670 (+) False cmtm6
TU106613 other downstream 253865 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 279239 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 889632 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 901582 39313989 ~ 39321325 (+) False LOC120563015

Expression Profile