RNA id: TU106282


Basic Information

Item Value
RNA id TU106282
length 825
lncRNA type read_through
GC content 0.36
exon number 2
gene id G79374
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38405111 ~ 38459995 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtttctctgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtttttgtgttagtgtctctgtctgtgtgtgtgtgtgtgtgtctgtgtctgtctgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtacggATTGTTTCAGTACTTGAAATTAGTCCACCAGAGTCTTTAGGGTTATAAATGATcaaaaaatagtaaataaatgtctgaaattaATTTTTTGTAATATTACTTTTGAAGTAGAGGTTTGTCTTTcatcctcagagggttaaaagcCATCAgatttaatttttctttttattcacagtccaacattttcttttaccaTGCAGCGACATTTTATTCACCATTCTGACAATCATACGCTTTATTGATTATAAAACATTGAATACACTCTATCTTTCTGAATACAAGAAATATTTTCTTATTCCCATCAGTCAGACAATCCAGAAATCAGATTTTATATCTACATGATTGACTTCCATGTTCAGGACCAAGTATATGTTATTTTGGAGAATGTAACTGTTtttgtaatataaatatatatatatatataaatctttCCATGCTACTCTTGTGCTCTGTGCCTGTAGAATATAGATGAGTTTTTCATCCATACCCCAGATATGACTTTCTCTTTGATATTCGCTGCCTTCTTCATGTCTGCTCAGATATTTGGGTTATTCTGTTATGTAATAAACCGATTTTCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106298 lncRNA upstream 24230 38380592 ~ 38380881 (+) True G79386
TU106295 lncRNA upstream 25899 38373827 ~ 38379212 (+) False G79384
TU106294 lncRNA upstream 28703 38373827 ~ 38376408 (+) True G79384
XR_005639905.1 lncRNA upstream 37262 38367119 ~ 38367849 (+) True LOC120563039
TU106270 lncRNA upstream 139834 38264735 ~ 38265277 (+) True G79367
TU106568 lncRNA downstream 96071 38556066 ~ 38556285 (+) True G79568
XR_005639903.1 lncRNA downstream 151264 38611259 ~ 38611869 (+) True LOC120563037
TU106607 lncRNA downstream 182553 38642548 ~ 38647914 (+) True LOC120563036
XR_005639902.1 lncRNA downstream 182572 38642567 ~ 38644006 (+) False LOC120563036
TU106615 lncRNA downstream 206277 38666272 ~ 38673012 (+) True G79605
XM_039806193.1 mRNA upstream 99219 38301454 ~ 38305892 (+) True LOC120562481
XM_039807011.1 mRNA upstream 113788 38287737 ~ 38291323 (+) True LOC120563007
XM_039806192.1 mRNA upstream 135043 38268277 ~ 38270068 (+) True LOC120562479
XM_039807006.1 mRNA upstream 146076 38257203 ~ 38259035 (+) True LOC120563002
XM_039806189.1 mRNA upstream 216348 38182235 ~ 38188763 (+) False LOC120562476
XM_039806199.1 mRNA downstream 65209 38525204 ~ 38575568 (+) True tg
XM_039807024.1 mRNA downstream 121523 38581518 ~ 38592495 (+) True LOC120563014
XM_039807025.1 mRNA downstream 121523 38581518 ~ 38590896 (+) False LOC120563014
XM_039807004.1 mRNA downstream 134050 38594045 ~ 39098913 (+) True LOC120562999
XM_039807015.1 mRNA downstream 225784 38685779 ~ 38780360 (+) False cpne4a
TU106244 other upstream 84504 38170054 ~ 38320607 (+) True G79351
TU106246 other upstream 84682 38170054 ~ 38320429 (+) False G79351
TU106280 other upstream 101423 38301425 ~ 38303688 (+) False LOC120562481
TU106224 other upstream 259333 38087976 ~ 38145778 (+) False nek11
TU106210 other upstream 327462 38056416 ~ 38077649 (+) False nek11
TU106613 other downstream 206277 38666272 ~ 38667524 (+) False G79605
TU106631 other downstream 231651 38691646 ~ 38711009 (+) True G79615
TU106594 other downstream 842044 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 853994 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 973466 39433461 ~ 39454292 (+) True G79713

Expression Profile