RNA id: TU107113


Basic Information

Item Value
RNA id TU107113
length 276
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G79944
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40015559 ~ 40037161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagacagacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacagagacacacacacagacacagagacacacacacacacacacacacagacacacacacacacaaacacacacagagagacacacacacacacacacacacacacacagagacacacacacacacaaacacacacagagacacacacacacacacacacacagagacacagacacacacacaaacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107079 lncRNA upstream 72558 39848532 ~ 39943001 (+) False G79922
TU107081 lncRNA upstream 97005 39803440 ~ 39918554 (+) False G79922
TU107076 lncRNA upstream 97005 39861074 ~ 39918554 (+) True G79922
TU107068 lncRNA upstream 144763 39714107 ~ 39870796 (+) False G79919
XR_005639755.1 lncRNA upstream 145598 39865784 ~ 39869961 (+) True LOC120562365
TU107137 lncRNA downstream 19852 40057013 ~ 40108481 (+) True G79957
TU107139 lncRNA downstream 19852 40057013 ~ 40099469 (+) False G79957
TU107142 lncRNA downstream 83009 40120170 ~ 40120511 (+) True G79960
TU107168 lncRNA downstream 185212 40222373 ~ 40255520 (+) True G79982
TU107174 lncRNA downstream 185421 40222582 ~ 40377864 (+) True G79985
XM_039806205.1 mRNA upstream 36194 39924325 ~ 39979365 (+) True LOC120562496
XM_039806074.1 mRNA upstream 186855 39811855 ~ 39828704 (+) True LOC120562359
XM_039806203.1 mRNA upstream 211672 39781236 ~ 39803887 (+) True LOC120562494
XM_039806080.1 mRNA upstream 244139 39765173 ~ 39771420 (+) True LOC120562364
XM_039807014.1 mRNA upstream 588439 39425328 ~ 39427120 (+) False LOC120563008
XM_039806075.1 mRNA downstream 45869 40083030 ~ 40093260 (+) True LOC120562361
XM_039806076.1 mRNA downstream 45869 40083030 ~ 40093260 (+) False LOC120562361
XM_039806206.1 mRNA downstream 74272 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806078.1 mRNA downstream 102572 40139733 ~ 40152085 (+) True LOC120562363
XM_039806086.1 mRNA downstream 231787 40268948 ~ 40289601 (+) True LOC120562376
TU107036 other upstream 246709 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 551718 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 561267 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 561267 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 694234 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 279578 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 297201 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 379917 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 382708 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 382818 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile