RNA id: TU107723



Basic Information


Item Value
RNA id TU107723
length 571
lncRNA type read_through
GC content 0.31
exon number 2
gene id G80299
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41215521 ~ 41598153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCATTTCAAtgaacattttatttgattattCAAAAGCCTCCAATACATTCATCACAtgacatttagctgatgcttttatccattAAGTTCATTCAACCATGAAGTTACAAACTCCTGACAGCAAGAATCAAGTGCAAGAACATTAGTTTAAAATCATTTCATGTTATGACAAAATCACAATTTGTAGATAATGTCATGAagattttattagatttttcaaaacccttcatttcattcattaaCATACAGTTTTTAGAACGGTAAAAGTAAagttacaattatttatttttttaattaacttttatttaaccaggtaggccgttgaggACAGAtggcgacctggccaagaaaagcataagtGTGCAAGACatcatacagtttcacattcaatacagtCTAAGAATGCAGAAtataataggctacataaaataCAGATTAAAATACAGATTAGGTAGGAATTACAAAGCCGGCgcaaagtgaggtgtaagtaagtCGATGGATATGTGAAAGTGATGtgataataacacaatatacatgaatagacatTCTATATAAATGCTGAAGTGTAgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107785 lncRNA upstream 16250 41421959 ~ 41456358 (+) False G80337
TU107790 lncRNA upstream 39061 41433046 ~ 41433547 (+) True G80339
TU107788 lncRNA upstream 50030 41421959 ~ 41422578 (+) False G80337
TU107752 lncRNA upstream 70442 41348582 ~ 41402166 (+) False G80318
TU107751 lncRNA upstream 70442 41401728 ~ 41402166 (+) True G80318
TU107841 lncRNA downstream 15947 41614100 ~ 41615261 (+) True G80364
TU107842 lncRNA downstream 18756 41616909 ~ 41617366 (+) True G80365
TU107834 lncRNA downstream 39985 41638138 ~ 41680108 (+) False G80363
TU107836 lncRNA downstream 39985 41638138 ~ 41696795 (+) False G80363
TU107839 lncRNA downstream 39985 41638138 ~ 41638883 (+) False G80363
XM_039806104.1 mRNA upstream 85279 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 152904 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 152904 41239083 ~ 41319704 (+) False LOC120562390
XM_039806103.1 mRNA upstream 178227 41220084 ~ 41294381 (+) False LOC120562388
XM_039804729.1 mRNA downstream 84260 41682413 ~ 41693005 (+) True LOC120561589
XM_039804730.1 mRNA downstream 86624 41684777 ~ 41688729 (+) False LOC120561589
XM_039804732.1 mRNA downstream 90358 41688511 ~ 41693005 (+) False LOC120561589
XM_039804728.1 mRNA downstream 129413 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 929343 42527496 ~ 42529482 (+) True LOC120562755
TU107784 other upstream 50030 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 50030 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 112402 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 289941 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 341345 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 405220 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 887182 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 934771 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 935267 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile