RNA id: TU107954


Basic Information

Item Value
RNA id TU107954
length 1063
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G80444
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 42083622 ~ 42085364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCAGAGGAACTACTTTGTCTTTGGGTCTCGGTACGTGATGactgaaacacacaacaacaacaacaacaacaacaacaacaacaacaacaatcacaGCTTTTAATatcacttattattattattattatataaaaaagggggggggggggtgtggggggtgtgtAGTACAGAGTGTATATTACTGCAGTACAGAGTGTATACTACTGCAGTAACCTACTGGATCATGTGTGTATAACGGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTATACTACTGCAGTAACCTACTGGATCATTGTGTAGTACACAGTGTGTATTACTGCAGTAACCTACTGGATGATGTGTGTAGTACAGAGTGTATACTACTGCAGTAACCTACTGGATCATGTGTGTAGTAACGGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTAGTAACGGAGTGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTATACTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGTAGTACAGAGTGTGTATTACTGCAGTAACCTACTGGATCATGTGTGCTGCGTATGCGCGGGAGCAGCAGCTGGCGTAGGGACACAGCAGACAGGAGACGTGAGTCGGGTAGTGGGCCGAGAAGTCGGAGATGTCGGTTCCACACTCCAGACACAGCAGGCGCTCTGCAGCGGGACAGGACGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107945 lncRNA upstream 23937 42059388 ~ 42059685 (+) True G80435
TU107927 lncRNA upstream 28356 42052485 ~ 42055266 (+) True G80420
TU107908 lncRNA upstream 32936 42046678 ~ 42050686 (+) True G80409
TU107942 lncRNA upstream 37336 42045608 ~ 42046286 (+) True G80432
TU107919 lncRNA upstream 84340 41946689 ~ 41999282 (+) True G80414
TU107903 lncRNA downstream 25628 42110992 ~ 42395787 (+) False G80409
TU107980 lncRNA downstream 253164 42338528 ~ 42476254 (+) True G80465
TU107988 lncRNA downstream 277376 42362740 ~ 42479064 (+) True G80473
TU107993 lncRNA downstream 289113 42374477 ~ 42448973 (+) True G80476
TU108367 lncRNA downstream 475952 42561316 ~ 42561622 (+) True G80695
XM_039804728.1 mRNA upstream 232920 41727566 ~ 41850702 (+) True LOC120561585
XM_039804729.1 mRNA upstream 390617 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 390617 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 394893 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 507119 41551091 ~ 41576503 (+) True LOC120562406
XM_039806643.1 mRNA downstream 442132 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 447560 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 450328 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 550461 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 578154 42663518 ~ 42666003 (+) True LOC120562768
TU107914 other upstream 77028 42003373 ~ 42006594 (+) True G80410
TU107913 other upstream 79006 41939498 ~ 42004616 (+) False G80410
TU107784 other upstream 661044 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 661044 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 723416 41356480 ~ 41360206 (+) True G80320
TU108350 other downstream 399971 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 447560 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 448056 42533420 ~ 42538282 (+) False LOC120562757
XR_005639821.1 other downstream 448056 42533420 ~ 42538282 (+) False LOC120562757
TU108439 other downstream 698131 42783495 ~ 42786405 (+) False LOC120562772

Expression Profile