RNA id: TU93653


Basic Information

Item Value
RNA id TU93653
length 699
lncRNA type sense_over
GC content 0.36
exon number 1
gene id zfpm2a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 1725158 ~ 1861166 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAATGTTATTGTATAGTCATTCTTGTGTAGCACACATATTGTTTACACTGTAGTGTAGGCTCAATGAAACAAATAGACAATACAAAAATGAGATGCATTTTAGACACAAAAATAGCTACTGAGGCACTTGTGTATTCTTATTTGCTGTACCAGTTTCTGTATATGCCCACAATGTCACTTGCAGATTGCTACTAATGACTTGtttgccttaaaaaaaaaaaataaaatcaccatTTGGGGGTGATAACCAGGCACAACCCTGCATCTCACATGTTGGCATATACACATGGCTTTGCATACATATGTGGCTGTTTGTCCCTGTCTCTTTTCTTCAACTCAGATGTGGATGTTTTCATGAGGATGGCAGCATTCTTGTATAGTACTCGTATTTCTGTTTGATGATACACTTTGGTCTCCCTTTTTGAAATTTGCGCTCAATGCAATACTTTGTAAATGAGGGAACATTACTGATAGCAGTATTATGAAATGGGGACTGTGCATATAATTATTTGTAACCCcatagggaaaaaaaagaagttgtaCAAGAATTACATTTATTGCTGATGAACAAGATGGGTGGGAGGTCAGTGGGGATACTGATGTAAAATGATCATTCCAATGTCCTGATTATgggagaaaatgttttcttaaaacGTTGTTGCTATGCATGTATATGGATGGAATTAAATTCCAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93620 lncRNA downstream 48833 1676118 ~ 1676351 (-) True G69893
TU93593 lncRNA downstream 370159 1354298 ~ 1355025 (-) True G69866
TU93518 lncRNA downstream 439305 1285584 ~ 1285879 (-) True G69817
TU93497 lncRNA downstream 551769 1173162 ~ 1173415 (-) True G69799
TU93487 lncRNA downstream 569681 1085502 ~ 1155503 (-) True G69794
TU93665 lncRNA upstream 221063 1946945 ~ 1947157 (-) True G69927
TU93670 lncRNA upstream 230309 1956191 ~ 1964307 (-) True G69932
TU93739 lncRNA upstream 402589 2128471 ~ 2128741 (-) True G69995
TU93857 lncRNA upstream 882360 2608242 ~ 2608898 (-) False G70090
TU93858 lncRNA upstream 882360 2608242 ~ 2608898 (-) True G70090
XM_039805880.1 mRNA downstream 74545 1376272 ~ 1650639 (-) False oxr1a
XM_039805879.1 mRNA downstream 169578 1376272 ~ 1555606 (-) False oxr1a
XM_039805885.1 mRNA downstream 213772 1376272 ~ 1511412 (-) False oxr1a
XM_039805877.1 mRNA downstream 213772 1376272 ~ 1511412 (-) False oxr1a
XM_039805882.1 mRNA downstream 250798 1376272 ~ 1474386 (-) True oxr1a
XM_039805130.1 mRNA upstream 251389 1977271 ~ 1979210 (-) True LOC120561841
XM_039807126.1 mRNA upstream 256522 1982404 ~ 2171236 (-) False rims2a
XM_039807129.1 mRNA upstream 256522 1982404 ~ 2171236 (-) False rims2a
XM_039807131.1 mRNA upstream 256522 1982404 ~ 2171236 (-) False rims2a
XM_039807128.1 mRNA upstream 256522 1982404 ~ 2171236 (-) False rims2a
TU93283 other downstream 992436 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 1696501 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 1696858 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 1697867 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 1698554 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 1903251 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 2253429 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 2346442 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 2346442 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 2346442 4072324 ~ 4077779 (-) True eny2

Expression Profile