RNA id: XM_039804728.1


Basic Information

Item Value
RNA id XM_039804728.1
length 5268
RNA type mRNA
GC content 0.48
exon number 43
gene id LOC120561585
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41727566 ~ 41850702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGCAGAGCGACAGTCTACAGTGGATCAGGATCAGGCCGAAGGATGAGTAGGACTCTGCTGTGGCTGCTGGCCTCTCTGGCCtttgtctctctgacttctcaGGCTGATGGAGCTCCATTGAAGCTGATGTCTGCCCCTAACTTGTTGCGGGTAGGAACagcagaaaacatctttgtggaGTGTCAAGACTGCACCGGGGGAAACATCCCGGTCCAAATCAACGTGATGAACCATCCAACCAAGAGCACAACGCTGACATCCACATCTGTGACCCTTACCAGTGAAAGAAACTTCCAGGAGCTCGGACAAATAACGATCCCTGCTGACAGCTTCAGTAAGGATCCTACCATAAAGCAGTATGTCTACCTGCAAGCTCAGTTCCCTGACCACCTGCTGGAGAAAGTCGTCTTAGTGTCCTTCCAGTCCGGGTACATCTTCATCCAGACGGACAAGACCCTCTACACCCCCAACAGCAAAGttTATTACAGGATGTTTGCATTGACGCCCGGTATGGAGCCCGTAGAGAGGGATGCCGAAACTCAAACTGATGCTTCTATTGCCATCGAGATTGTGacccCTGAGGACATCATTTTACCATTGGATGTAGTCCCTTTGAAATTAGGGATCCACTCTGGAGTTTACCAACTTGCTGAAATTGTCAGtcctgGACTGTGGAAAGTGGTGGCGAAGTTCCAGAGCAACCCACAACAGAGCTATTCTGCAGAGTTCGAGGTCAAAGAATATGTGCTGCCCAGTTTTGAAGTTAAACTGATGCCTGAAAGATCCTTCTTCTACGTGGACAGTCCAGTGCTCACCGTCAACATCAGAGCTACGTATCTGTTTGGTCAAGAGGTGGATGGGACGGCCTACGTGGTGTTTGGGGTTATGCAAGACGGTCATAAAAAGAGCTTTCCAGGTTCTCTTCAGAGAGTGCAGATAGAGAATGGTAATGGAGAGGTGACACTAAAGAGAGACCACATCACACAGACTTACCCAGACATCTCTGAACTGGTGGGGAGCTCCATGTATGTAGCTGTTGGTGTGCTGACGGAGAGTGGTGGTGAAATGGTGGAAGCGGAGTTGAGAACTATCCAGATTGTTACATCACCTTACACTATCACCTTTAAGAAAACGCCCACATTTTTCAAACTAGGAATGTCCTTCCATGTTACGGTTGAAGTTGTGAATCCTGACGGCAGTCCGGCAGAGCGTGTTGCCGTGGTGGTCGACCCCGGCCAGGTGAAAGGCATTACCGCAGCCAATGGCATGGCAAAGCTTCCCGTCAATACAGTGGCGACGGCACAAAGACTGACAATCACCGCAAGGACCGAGGATGATCGTATTTCAAATGAAAGGCAAGCATCAGCCACCATGGTAGCTCTCCCATATACCACTCCAAGCAACAACTACATCCACATAGGTGTGGATACACCTGAGCTGAAATTAGGAGACAACCTGAGATTCAGCCTCATACTCAACAGGCAGGAAAAACAAGACACTGACATCACATACCTGATCCTGAGCAGAGGTCAGCTGGTGAAAAATGGACGTTACAGGAACACAGGTCAAGTTCTGATTTCCCTGAGTGTTCCCATTACCCAAAACATGCTGCCATCGTTCCGCATCGTAGCCTACTACCACACAAATGACAATGAAGTGGTATCAGACTCTATATGGGTGGATGTAAAGGACTCCTGCATGGGCTCGCTGAGACTGGAACCATTGAATCCCGCTCCATCCTATGAGCCTCGCAGGTCCTTTGGTCTGAAGGTCACTGGAGACCCAGGGGCCGTAGTGGGACTGGTGGCAGTTGACAAAGGCGTGTACGTCCTAAACAACAAGCACCGTCTCACCCAGAAAAagGTGTGGGATACTGTGGAGAAGTACGACACAGGCTGCACACCAGGAGGAGGGAAGGATGGTATGGGTGTGTTCTACGATGCTGGGCTGTTGTTTGAGTCCAAAACGGCTTCTGGAACTCCCTACAGACAAGAATTAAAATGTCCGGCCCCCAGCAGGAGGAAACGAGCCGCTACTATAATGGATGTAACAACCAGCTTAGTGAGTCAATATCAAGACCAACTCCAACGTGAGTGTTGTTTGGATGGCATGAGGAACACCCCCCTCTCATACACCTGTGAGAGGCGAGCGGAGTACATCAGTGATGGTGAAGCCTGTGTCGCAGCCTTCCTGCACTGCTGCAAGGAGCTGGAAACCCATCGAGCTGAGAGGAAGGAGAATAACCTTATACTGGCTCGCAGTGAGGAGGATGACAGTTACATGGACAGCGATGAAATTATTTCTCGCACCAAGTTCCCTGAAAGTTGGCTGTGGTTAGATGTGACTTTGCCTGCTTGTCCTCAACAAATACCAGACTGTGACACCACATCACTGACGACAAATGTTCATTTGCAAGACTCAATCACAACCTGGCAGTTCACTGGCATTAGTCTGTCAAGAGCTCACGGAATCTGTGTTGGCGAGCCATTAGAGGTCGTTGTCCGGAAGGAGTTCTTCATTGATCTCAGGCTGCCGTACTCTGCTGTCCGTGGAGAGCAGCTGGAAATTAAGGCAATCCTCCACAACTACACCCCCGATCCTATCACCGTGCGTGTGGATCTGACTGAAGAGCAGCATGTGTGCAGTTCAGCCTCTAAACGTAGAAGGTATCGCCAGGAGGTCAAAATGGGGGCCCAAACTACACGAGCTGTACCCTTCATCATTATTCCCATGAAAGAAGGAAAATTTAACATTGAGATCAAAGCAGCTGTTAAAGATTCTTCGCTAAATGATGGAATCATAAAGAAGCTGCTGGTGGTGCCTGAAGGCGTACTGGTTAAATCTCCTCAGATTATAATTCTAGACCCCACTACTAAAGGTGTAGCTGGTAAACAAGAAGAAACTCTCAACAGTGGAATTCCTATCAAAGATTTGGTCCGAAACACACCTACTAGCACACAGATCTCAGTGACAGggagaGAACAAGTTTCTACGCTGGTGGAGAACGCCATTAGTGGGGACTCTATGGGTACTCTGATCATCCAGCCCAGCGGCTGTGGAGAGCAAAACATTGCTAGCATGACCCTACCAGTCATTGCAGCCACATATTTGGACAAAACCAACCAATGGGAAACTGTGGGCTTTCAGAAACGTAACGAAGCCCTCCAACACATCAAGACCGGCTACCAGAATGAGCTTGTCTTCCGTAAAAAGGATGGGTCCTTTGCTGTTTGGGCGCATAGCGAGAGCAGCACCTGGCTGACAGCGTATGTTGCCAAGGTGTTTGCCATGGCTGACAATCTGGTGGCAGTTCAAAAAGAGCACATCTGTGAAGCCATCAAGTTTCTGGTTCTCAGGGCACAGCAACCTGACGGCTCGTTTAGAGAAGTTGGAACGGTTAGCCATGGAGAGATGATTggtgatGTGAGAGGTGCAGATTCAGATGCCTCCATGACGGCCTTCTGCCTCATTGCCATGCAGGAGTCTCGCACACGATGTAATGACACTGTTCAAAGTCTGCCAGGCAGTAAAGACAAAGCAGTGAAGTATCTGGAAAGGCGTCTGCCCCGCCTCACCAACCCATATGCTGTTGCCATGACGTCATATGCCCTGGCCaatgaaaacaaactgaacaaGGAGATCCTCTACAAGTTTGCTTCCACAGAGAGGTCCCACTGGCCAACACCTAAGGGACACGTTTACACACTGGAGGCCACAGCTTACGCTCTTCTCGCTCTGGTCAAGGCCAAGGCATTTGAAGAAGCCAAACCTGTTGTGAGATGGTtcaacatgcagcaaatggtGTACGGAGGCTTTGGATCAACTCAGgCTACTATAATGGTGTACCAGGCCATAGCCGAGTACTGGGCTAGTGCTAAAGAACCAGAGTATGATCTGAATGTGGACATTCTGTTGCCGGGCAGGTCAAAGCCTGACAAGTTCAACTTCAACAGAGACAACCACTACGCCACCAGAACATCTAAAATCAATGATATAAACCAGAATGTGACAGTAAAAGCCGAGGGTACAGGAGAAGCTACGGTGAAAatGGTGTCTCTGTATTACGCTCTGCCTAAAGAAAAGGAAAGTGACTGTCAGAAGTTTAACTTATCAGTGCAGCTCCTGCCAGAGAAAATGGATGAGGACGAGAAAATATACAAGCTGAAAATAGAGTTTTTGTATAAGGACAAAGAGAGGGATGCATCCATGTCAATCCTGGATATTGGTTTGCCAACTGGCTTCACCGTTAACACAGCTGACCTGAACTTAttgTCTAAAGGACGAGCCCGCATATTTCCAAAATATGAGATGAACAAAGTCCTGTCAGAAAGAGGCTCACTCATCATCTACCTGGACAAGGTTTCTCACACACGACCAGAGGAGATTGCTTTTAGGATCCATCAGGAGATGAAAGTGGGATTCACACAACCAGCTGCTGTGTCTATCTATGAATACTATAACCAAAGACATTGTGTCAAATTCTACCATCCAGAGAGGAAAGCTGGAAAGCTAATGCGTCTCTGTACAAGTGACACATGCAAATGTGCAGAAGAGAACTGCAGTATGCAGAACAAGGAGGAAATCACCAATGATCATCGAACAGCTAAGATCTGTGAGAGTATACAGACCAGCATAATAGATTATGCGTACAAAGTGAGACTGGaaagttttgaagaacatttgtCCACTGACATTTACAAAGGGAAGGTACTGGAAGTCTTCAAAGAAGGAAGTACTGATGTGGGTCCTCTGAATCAACAGCGCACATTCCTCCGTTATCCCTACTGCAGGGAGTCTTTAGATCTGGGGACGGGCAAAACCTACCTTATCATGGGCACGTCCAAAGATATTCACAGAGATGACCATCAATCGTATCAGTATGTGTTTGGAGAGAGAACCTGGATCGAGTACTGGCCCACAGAAGCTGAGTGTCAAACTGAGGAACACAGAATCACCTGTTTGGGCTTGGAGGAGATGGTTCAACAGTACGAGATCTTTGGGTGTCAGCAGTAGTGAAactcaagaaaagaaaatgtcatttaaaattgttttttaatttgcatCATTCTTATTATGTAAAACATTCCCTGCTATGGGATATGATGGCTCACAATGTTCCACTGTATTGATTAAAATGTAATGGTCTTAAAGGTTCAGTAGGAAAGacataaaactacctttctgtcatatttgctgaaactgaccctatgttcaagtagaactacatgaagcaggtcatttagttcgggggaggagggaggggct

Function

GO: NA

KEGG:

id description
K03990 C3; complement component 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639617.1 lncRNA upstream 9875 41711655 ~ 41717691 (+) True LOC120561593
TU107837 lncRNA upstream 30156 41656612 ~ 41697410 (+) False G80363
TU107836 lncRNA upstream 30771 41638138 ~ 41696795 (+) False G80363
TU107829 lncRNA upstream 30771 41662566 ~ 41696795 (+) True G80363
TU107832 lncRNA upstream 30771 41679258 ~ 41696795 (+) False G80363
TU107893 lncRNA downstream 28059 41878761 ~ 41879073 (+) True G80402
TU107896 lncRNA downstream 45216 41895918 ~ 41977583 (+) False G80405
TU107899 lncRNA downstream 45216 41895918 ~ 41989851 (+) True G80405
TU107900 lncRNA downstream 68765 41919467 ~ 42422688 (+) True G80406
TU107901 lncRNA downstream 76756 41927458 ~ 41927764 (+) True G80407
XM_039804729.1 mRNA upstream 34561 41682413 ~ 41693005 (+) True LOC120561589
XM_039804732.1 mRNA upstream 34561 41688511 ~ 41693005 (+) False LOC120561589
XM_039804730.1 mRNA upstream 38837 41684777 ~ 41688729 (+) False LOC120561589
XM_039806133.1 mRNA upstream 151063 41551091 ~ 41576503 (+) True LOC120562406
XM_039806115.1 mRNA upstream 181972 41541930 ~ 41545594 (+) False LOC120562396
XM_039806643.1 mRNA downstream 676794 42527496 ~ 42529482 (+) True LOC120562755
XM_039806644.1 mRNA downstream 682222 42532924 ~ 42539601 (+) True LOC120562757
XM_039806645.1 mRNA downstream 684990 42535692 ~ 42538282 (+) False LOC120562757
XM_039806658.1 mRNA downstream 785123 42635825 ~ 42643990 (+) True LOC120562767
XM_039806659.1 mRNA downstream 812816 42663518 ~ 42666003 (+) True LOC120562768
TU107784 other upstream 304988 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 304988 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 367360 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 544899 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 88796 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 152671 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 634633 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 682222 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 682718 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile