RNA id: XM_039807020.1


Basic Information

Item Value
RNA id XM_039807020.1
length 1990
RNA type mRNA
GC content 0.62
exon number 5
gene id LOC120563011
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39391948 ~ 39419673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCTAGCGCGAGGAGCATCAGTCACTGCGCACGGCACCGAGCGAGCAGAGCAGAGAAGCGACACCAGCCAGCGGACATATGAAGGCTTTCCTACCCCGGATCGGCGGCTTGTTTTCGGTCTTTTCCTCTCGTCGTCGTCGCTTCTCTATGGATGTGAAATAAAAAGCGTGCCGGTAGTCAGTCGGTGtcctctttccatctctctccatctttctctctctctctccgctctTCTCCCCGCTCCGTCAGGACCGCATCCTGCCTCAAAAGCCACAAAATGGCGGACATCATCGAGCTGGGACCCGCCTACGCCATGTCTCCGGTCCTGGCGGGCTTCCTGGGAGCCGGTGTTCTGGTCCTGGTCGTGGTGGTTCTGGTGTTGCTCTGGTCCTTCTGTCAGCGCCGCTACCTGCGCAGCGCCGGACGCTACAAGCTGCACGGTGACCGCTACTGCGACGCCGAAGACCCCCCCTACAAGTTCATCCACATGCTGAAGGGAATCAGCATTTACCCAGAATCCCTCAGCGGCAGCAAGAGGATAGTGCGTGGCATCCGGCGCGCCGAGCGCTCCGAACGCCCAGACGGTGACCGAGGCTGCTCGGCCGCGGGAAGAGGCATGGTGCTCGTCGACGCCGAGAACAACATCCTGGACGTCCCGGGACAGCTTCAGATGAGCCACCTGGTCCCGCCTGGTGGGCCCGGCGCCGCCGCGCACGGCCAGGGGGGCCGCGTGGAGCGCGTGCTGCCCGTCCGCGCCGACTACTGCTGCCTGGACAGCAGCTCCGCCAGCAGCAGCCAGACCAGCAGCAAGACGGCCTCCCCGTTCACccCTACGTTCACGCCAGCGACCTccgagcccgagcccgagccgAGCCTGGGCGCCATCAGCCTCACGGTCGACTACAACTTCCCCAAGAAGGCGCTGGTGGTGACCATCGTGGGCGCGCGCGGCCTGCCGGCCGTGGACGAGCAGGCCGGCAGCTCGGACCCCTACGTGAAGATGACCATCCTGCCGGAGAAGAAGCACCGCGTGAAGACCCGCGTGCTGAGGAAGACGCTGGACCCGCTGTTCGACGAGACCTTCACCTTCTACGGCGTGGCGTACAGCGCGCTGCCCGAGCTCACGCTGCACTTCCTGGTGCTCAGCTTCGACCGCTTCGCCCGCGACGACGTCATCGGCGAGGCCGTGGTGCCGCTGAAGGGCGTGGACCCCAGCACGGGCCGGGTCCACCTGAGCCAGCAGATCACCAAGAGGAACATGCAGtgtgAGAGCCGTGGGGAGCTGCTGGCGTCTCTGTCCTACCAGCCCGTGTCTCACCGTCTCAGCGTGGTCGTCCTGAAGGCTCGACACCTCCCCAAGATGGACATCACCGGCCTGTCAGCAAATCCGTACGTGAAGGTGAACGTCTTCTACGGACGTAAACGGATCGCCAAGAAGAAGACGCACGTGAAGAAGTGCACGCTGAACCCGGTCTTCAACGAGTCCTTCATCTACGACATCCCGCCCGAGCTGCTGCCCGAGATCTCCGTGGAGTTCCTGGTGGTCGACTTCGACCGGACCACCAAGAACGAGGTGCTGGGCCGCCTGCTGCTCGGCCTGCACAGCCCCGCCCCCTCTGGCGCCTCCCACTGGCGGGAGGTCTGCGAAAACCCGCGCCGGCAGATCTCCAAATGGCACAACCTGAGCGAGTACTGAGGGCGGAACCGCCAGAAAACCAGCCGACACGCAACACCGCCACGCGGCTGGGACTCTACCAGCCAACACCGCTgggaaacaaagacacacacacacacacacacacacagacaaacatacacacacatacacacacacacacacattgttgtgATCAAAGTTCAAGGGTAACTTCGGTATTTTGCCTGGACTCTatgttcccatgtttttgtgactgatgtgaacaaaaaactctgaaactggtccagaattatcagttagagtccactaaaagttttgttgttgccgctga

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19911 SYT11; synaptotagmin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639894.1 lncRNA upstream 3741 39385546 ~ 39388207 (+) True LOC120563028
TU106750 lncRNA upstream 10281 39380288 ~ 39381667 (+) False G79710
TU106752 lncRNA upstream 10320 39380288 ~ 39381628 (+) True G79710
XR_005639899.1 lncRNA upstream 31262 39359474 ~ 39360686 (+) True LOC120563033
XR_005639898.1 lncRNA upstream 55997 39335351 ~ 39335951 (+) True LOC120563032
TU106764 lncRNA downstream 12640 39432313 ~ 39433121 (+) True G79717
TU106758 lncRNA downstream 14777 39434450 ~ 39454292 (+) False G79713
XR_005639897.1 lncRNA downstream 56102 39475775 ~ 39479389 (+) True LOC120563031
XR_005639895.1 lncRNA downstream 65278 39484951 ~ 39485980 (+) True LOC120563029
XR_005639896.1 lncRNA downstream 79673 39499346 ~ 39501137 (+) True LOC120563030
XM_039807026.1 mRNA upstream 45516 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA upstream 60432 39321630 ~ 39331516 (+) True LOC120563019
XM_039806202.1 mRNA upstream 85861 39302167 ~ 39306087 (+) False dcst2
XM_039806201.1 mRNA upstream 113445 39265833 ~ 39278503 (+) True LOC120562489
XM_039807037.1 mRNA upstream 361114 39020813 ~ 39030834 (+) False LOC120563022
XM_039807012.1 mRNA downstream 5655 39425328 ~ 39427120 (+) True LOC120563008
XM_039807014.1 mRNA downstream 5655 39425328 ~ 39427120 (+) False LOC120563008
XM_039807013.1 mRNA downstream 5655 39425328 ~ 39427120 (+) False LOC120563008
XM_039806080.1 mRNA downstream 345500 39765173 ~ 39771420 (+) True LOC120562364
XM_039806203.1 mRNA downstream 361563 39781236 ~ 39803887 (+) True LOC120562494
TU106586 other upstream 70623 39313989 ~ 39321325 (+) False LOC120563015
TU106594 other upstream 87878 39302039 ~ 39304070 (+) True dcst2
TU106631 other upstream 680939 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 724424 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 947278 38433993 ~ 38444670 (+) False cmtm6
TU106757 other downstream 13788 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 13788 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 40775 39460448 ~ 39463841 (+) True G79722
TU107036 other downstream 348254 39767927 ~ 39768850 (+) False LOC120562364
TU107204 other downstream 897066 40316739 ~ 40321067 (+) True G80003

Expression Profile