RNA id: XR_005639901.1


Basic Information

Item Value
RNA id XR_005639901.1
length 950
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120563035
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 39120310 ~ 39121952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCTTTAAAAATTGCTTCGTTGATGAGTTGTGCTCCTGTCTGGATAAGACATATTCAAAAAAAGGTCCTGGCTGGGATAGCTTTTGTCAGCTCCCTACGTATTGATGTGTTATAGCTGGACTGCGGAGCTTTCATGTGATGGAGGCAGAATttcttactactactactccccTTCTCTCAAAGTTCCTTACACAACTTGACCAACGCACTGAGCAGCTCATGAAAGTGTTGAACAAAGGAGGCTCTGCAGGGAGGAAAATCAGGATCATTATGGCCCCAATGACAAAGGAAGCCGAGGGAGCTTGAGAAGTCACCTTTGGTATCTACAGCATCGATGTTAAGGGAGGTGATACCGCCACTCCTCCAGCCGATGTTGGAATTGTGATTCAGCGTGTTGAAGTTCTGCACGACTTGAGAGACTTTGCCTCTGCATGTGCCCTGAGTTATCCTAACAGACTGAAAGCCTTCTTTGAAGTACTTCAAAAGTTCTTCCTTCAAATGGATGCTTGCAGACTCTCAACCAAGGTACAGCTGCTCATTAACTAACTGTACAAATGAGACAATCACTGATTTGGATGCTGAATGTTTCATTGAACAGGAGAAATATTTAGGGccgaaactgaaaaaaattatCTGTTTGAAAATAGAGCAGAGAAACTACACTTGAGGAAAACGACCAATTTCTTTGCAAACTTTTGAAAAACTTATCATACAGGAAAAGTGGTAGTTGAGTGGCACTACTAGAGAAGTGATGTAGAATTGAGAGACCATGCTGCGCAAAAACGGTTGATATACAACTATGGCTATTTTGTGGATGTTTTAACACTAAGCTGCATCAAAAACAACTGCAAGGAAGTTCAATCATCAGACCATCTTAACCATCGTTAAAGAAATCCTACTTTAGAGTAGATGTTTGTTAAAGTGTTGCCACTGAAAACTTTATTTTAga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106602 lncRNA upstream 21698 39094890 ~ 39098612 (+) False LOC120562999
TU106695 lncRNA upstream 98129 39020939 ~ 39022181 (+) True G79660
TU106692 lncRNA upstream 111420 39008640 ~ 39008890 (+) True G79657
TU106687 lncRNA upstream 113306 38975402 ~ 39007004 (+) True G79653
TU106662 lncRNA upstream 233112 38886728 ~ 38887198 (+) True G79639
TU106716 lncRNA downstream 14534 39136486 ~ 39136756 (+) True G79679
TU106722 lncRNA downstream 69482 39191434 ~ 39193622 (+) True G79685
TU106723 lncRNA downstream 72028 39193980 ~ 39194992 (+) True G79686
TU106600 lncRNA downstream 107919 39229871 ~ 39232219 (+) True G79592
TU106726 lncRNA downstream 108992 39230944 ~ 39307739 (+) True G79689
XM_039807004.1 mRNA upstream 21397 38594045 ~ 39098913 (+) True LOC120562999
XM_039807035.1 mRNA upstream 89476 39020810 ~ 39030834 (+) False LOC120563022
XM_039807036.1 mRNA upstream 89476 39020813 ~ 39030834 (+) True LOC120563022
XM_039807037.1 mRNA upstream 89476 39020813 ~ 39030834 (+) False LOC120563022
XM_039807038.1 mRNA upstream 89476 39020820 ~ 39030834 (+) False LOC120563022
XM_039806201.1 mRNA downstream 143881 39265833 ~ 39278503 (+) True LOC120562489
XM_039806202.1 mRNA downstream 180215 39302167 ~ 39306087 (+) False dcst2
XM_039807026.1 mRNA downstream 190687 39312639 ~ 39346432 (+) True LOC120563015
XM_039807030.1 mRNA downstream 199678 39321630 ~ 39331516 (+) True LOC120563019
XM_039807020.1 mRNA downstream 269996 39391948 ~ 39419673 (+) True LOC120563011
TU106631 other upstream 409301 38691646 ~ 38711009 (+) True G79615
TU106613 other upstream 452786 38666272 ~ 38667524 (+) False G79605
TU106301 other upstream 675640 38433993 ~ 38444670 (+) False cmtm6
TU106246 other upstream 799881 38170054 ~ 38320429 (+) False G79351
TU106594 other downstream 180087 39302039 ~ 39304070 (+) True dcst2
TU106586 other downstream 192037 39313989 ~ 39321325 (+) False LOC120563015
TU106757 other downstream 311509 39433461 ~ 39454292 (+) True G79713
TU106759 other downstream 311509 39433461 ~ 39454292 (+) False G79713
TU106769 other downstream 338496 39460448 ~ 39463841 (+) True G79722

Expression Profile