RNA id: XM_039808133.1


Basic Information

Item Value
RNA id XM_039808133.1
length 5406
RNA type mRNA
GC content 0.51
exon number 11
gene id nfat5a
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13409573 ~ 13426661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaacagatttgagtccctgacctcgccagactatCCCACGGCTTATAATCGGGTTAATGTGTCCCGGGCCTCATAGAGATCTTTTGTTTGGCATTGTATTTTAAAAGTTGTGTAATTTTACACTGTCATGGTTTGTCTGGTTTAAAGGGATGGTTCACTTAAACAACATGGTCATGACAATAGTCTACAGATGTCGTTACGGACAGTTTCACTGGTGTCCTGCACAGGGCACTGTTCACAGGAGGAGCTGTGTGAATTATAACAACTCTTTGTAGATGTGGAAAGAAACATTGctgatcagttttttttaaatgtaatttttgagCACTTGGAGCACCACAAACTCCACGCTGCAAGCTACATTTTCAAACCCCCTGGATGGATAAAcagtttttattgtatttttgagGGAACTATCCCTTACCATGGAGCTGGCCTCTATCTCAATGCTCAGAGTTTTGCCTGTCTGACTGAACTAGAGTGCTGTGTAGCTCTTTGTGTGAATTGTGACTTTGTGTTGTCAACAGCATCGTTGTCGTCACAGAACTGCAAGATCATGTGTCTTGTCAGTTTCACTATTCTGCTGGCGCTAAGTCATAGCTGAGTATCAGATGACTACTACACATGCTGGGTGCCGCCGATGCACAGCTGAAATATCCATGTCAGGGTGTTAATGGTTCCTCTGTTTCTTAGCAACCAGACTACCTAATCGTGTTTATCTGCCATCGAATGCAGTTTATTCCTGTGTAGCTGCAGTGGTTGGTTATAGCCTACTAGAAATCATCCAACCATCAAATAGCAAGGACTGTCTCTGTGGGTCTTATTACACTAAAACCCATGGGAGGCTAATTTAGTTTATCATCAGATAGCCTGTGTTGTGTTAGTGTTGACAGCAGAATATTTTGTACATGTGGGAAAAACTAAACCTGAGACCCAGGTTTTGCTTTCAGTCCCATTCCAGGATTCCTATTGACACCACTACATTTTGTGAAGAATATGTACTGCACTAGTTCAGCACACCGGGTCTGCACTGGGTTCGGTTTTTGGCCAATGATAAGTACATAATAATGTATGCTTAGTGTTCCAAGGGTTTAACTTGTGAACTTAAACCTGACCATCTCAAGTTAACTGGCAGCAAAAGCGGATATTGCTCTgtcctcttaaaaaaaaaaaaacgAGTCGGTATATGACCTCCTCCCCAAAGAGCTCCAGCTCCAGCCGTCGTCCACCCAGACAGACCCACCCACCATGAGCCAGAAGAGTGGGGGAGAGGCGGGCCCTCCCCCCTCTGCAGCCTTGGCCTCAGATGCCACCTCTTCCACCTCCAGCCCCTCTGCCTCTTCCTCCCTGGCAATGGGAGTCCCATCCACTGGCTCTACCTCATCCTCAGAGCATCTCAAGATTCCCCAGCATCTCCACTCCACTGGAGGGGATGGAGCTGGAGCTTCAGAGATTCAAGGTATGGAGGGTGCTGTGTCTGCACCCAGCAGATGCAACAGTGGAGCAAACACTGCAACAGGAGACACAGGGTCAGGAGCGTTGTCAGGGCTAGGAGTCCAGCAGCCTCAAAACACCCCATCAAAACGGAGGCCCGTGTTGAGCATCTCCCCGCCACCTGAGGATCTATTTGACGACAGCCAGATGTCTTGCCAAGAGGAGCCTGCCGTATCTGGTCCAATAGGTCCAGATTCAGAGCATAGCAGCAGCATGTGGGCTGATGACTCCGTCTCCAACTTCAGCTTGATCAGCTCCATCTCCTACAATGACAACACAGAGGTGCCGCGCAAGTCGAGGAAACGCACCCCTCGCCAACGGCCTGGGCCAAAGCCTGCTCCTCCGGAGGACAGCATGGATGTGTTTGATGCTGACAGCGCCAAGGGCCCTCACTTTGTCCTATCCCAGCTGGGCACAGACAAGACCAGTCCCATAGCTAGCTCTCTCGAGTCAGGAACTGCAGTGAAGGGTGGGTCACTATCTACTCAGTTCCCCCAGAGGAGTGATGGGAAAGAACTAAAGATCTTGGTGCAGCCAGAGACCCAGCACAGAGCTCGCTATCTGACCGAGGGCAGCAGAGGTTCTGTAAAAGACCGCACACAGCAGGGATTCCCCACTGTCAAGTTGGAAGGCGTGAATGAACCAGTTGTGCTGCAGGTGTTTGTTGCGAATGATGCAGGCAGAGTAAAGCCTCACGGTTTCTACCAGGCATGCAGAGTGACAGGGCGCAACACCACTGCTTGCAAGGAGGTGGACATAGAGGGCACCACTGTTATTGAGATCCCTCTGGAGCCGAGCAATGACATGACACTGGCGGTGGACCGTGTAGGAATTTTGAAGCTGCGTAATGCAGACGTGGAGGCCCGTATTGGTGTGGCAGGGTCCAAGAAGAAGAGCACACGTGCCAGGCTGGCCTTCAGAGTCAACATCCCCCAACCTGATGGATCAGCCCTTACTCTACAGGTCGCTTCATCACCCATCCTCTGCACCCAGCCAGCAGGAGTGCCAGAGATCCTGAAGAAGAGTCTTCACAGCTGCTCagtgagaggaggagaggaagttTTTATCATCGGGAAGAACTTTCTCAAAGGAACCAAAGTTATTTTTCAGGAGAATATTGCAGatgataatTCCTGGCACGCTGAGGCAAAGATTGACATGGACCTTTTCCATCAGAACCATTTGATAGTGACAGTCCCTCCGTTCCACAACCAGTCAGTCACTTCTCCCATTTCTGTGGGAATATTCGTGATGACCAATGCTGGTAGATCACATGATGCCCAGCCCTTCACCTACACTCCAGACTCAGCTGATAACTCAAATGTCCAGACAGTAAAAACAGAGGGACCCTCTCTGGTCAAGACGTGTATATTTGATGGCCAGATCAAATCTATATCTCCTGAGCAAACTGACAGCTCTGCTCCGCCTTCCAAACGGCAAGAGGACACACCAATGGAAGTGTCTAGCAATCCACCACCGACAGATGTCTTTAAACCGTCCCCTGACCCTCTTGTTGCGGTGCAGCAGACGCTGGAGCTCCGCTCTAGTCCTCACCCAGGTGGAGATTCCTTTCAGAGCCCAATGCCTCTACAACCTGAAGATGTGGAGCTTCCCCAGGCGCCCCCTGTCTTCCCCAGCCTAGAGTCTCTCAGCACCATACAAAAGCAAGACATTGGCCCCACAACCTCCTTCCCAGTGCCAGGCGATGTTACAATCCCCCCTGTGACACCAGAGGTCCCTCAACAATTCCTCCGAGACCCTCAGGACAGCATACCTCCTGAGAGCTCCAATAACAGTGGAGGGGTCGTAGTTGTGGCCATGTCCCAGATAGCGACTCCCTCTCAGCCCCAGCCACAACAGTCACAGGTTCCCCTGTTCCCCCAGGAAGGGGTGGCCCAGCTGGAGAGGGCAGTCAGGGAGCTACAGGCTGGAGGTAGCACCACGCttcagcaggtgttggaggCGGCTGTAGCCCAGCAGCAGCTGAACTCAGTGCTGTACAGCCCCACCCCCTCTGCCGACTCCCTTCAGCAACACGTCCAGGAGAACATGAATAGCCTTAGATTAGGAACCACAGATAATTCATTATCAACACAGCAACAGCTACAgatacaacagcaacaacagatacaacaacagcaacagcagatacaacaacaccaacagcagatacaacaacaacaacaaatacagcAACAGTTTCAACAGCATCAACaactgcagcaacaacagcaaatcCTGGGTACCCTccagcatcaacaacaacaacaacaacaacaacaacaacagcaacaacaacaacagcaacacttacagcagcaacagcagcaagtTCCCGGCAACATGCAGATCCAACAACAACTTATGTTACAGCCACACGACCAGCAGCAACTGCAGCAGCAAATCATGGAGAATattcaacagcaacaacagttGCAACAAAATCAGCAACAGCAAGTGCTAAACAACATCCAACTTCAGGATCAGcaacaacaaaatcaaataCTAACCAATTTACAGCAACATcagctacagcagcagcagcagcagcagcagcaacaacaacaacagcaacagcaacaacaacaacagcaaaatcagcagcagcagcaaaatcAAGTGTTGAGCAACTTACAACTGCAAGAGCAGCAGGTGTTGGAGAATTTACAGCAGTGCCTTCAGGCTGAGTTGCTTCAGCCCCAAATCCACTCCTCCCCCCAAGGACCGCAGCCAGTGTCCATCCTCCAACAGGCCGGAGAGCTTCTCACCATTCAGACCAGCTTCCCAACACAGCCCCCATCCCACACATCTCCCCCACAGCAGCTCTTTCAATCGCCCAGGCCCTTGGCTGAGACCCAGGGCTCTCAGCAGCAGGTCCAGGCTGCCCTGCTCCAGAATACGCTGACCGTTCTGACAAGTGGCAGTCTCAACTCAAAGCAGCAGCCCGCAGGGTCAACACTATACCTGTCCCCAAACCCTCAGCCccaccaacaacaacagcagcagcagcagctagcattCATCTCCTCCATGGAGACATCGAACAGCCAGCCCCAGTCTGTTGCTATGTTTCAGAACCAACCCCAAGCTCAGCTTTCCCAAATGCAGCAACAGAGCACCCCAATGGAGCAACAGCAGTCTCCACAGCAGAACCAACAACAGCCAACGCAGCTTTCATTGGGCCAGCAGGGCTCCTTGTTCCAAAGTATCCCAAACCACTCACAGCCTAACCCTGTCCCCCAGAACCAGCTTTCCCAACCCCAGCAGACAGGTCTCCTCCTCTGCACCACAGATCTTAACCCCCAGGCTATTCCCCCAACTATTCTATTTAGCACCCAGACCCAAGGCCCTTCCCCTCTGGGGAGCATTAGCGTCGGAATCTCCCAGCCAGACACAGCAGAGCCCATGTCCTTCCAAGACCAGAGCTCCTCAGGCAGCAACTCTACATCCACTGAGAACCAACAGCAGAGCCTGTACCAGGAACAGCAGCCAATGCAAGTGGGCCTGAGTTCCAGCAGCGTCCCGAGCAGTCAACCTGTGGAGCTGTTCTTGCCACAGACATCTCTGTCCAGCCTGCAGAGCACTATTGGCTCACAAGACCTGAACAACCAGGCTCCAGCCCCTGGCACCACCATCTTTGTGGTACAGGGTGGTGTGGGTATGGTAGCCAACCCTGGCCAGCAGCCCCCGGAGCAGCTTTTCCAGACCACTGTGGGTGGGAATGTGGCTCCACAAGGACAGGCCAACCTGTTTGTGTTTGGCATCCAGAACGGTAAGATGATTTGGTCTTCTCCACCTCTGAAGTACAGTAAATCCGAGTTAAGTAACTGTGTTGAATCCCTGCCAATGTCACTGCCAATAGCTTTACCTGCTGTTTGATTATAGtgattatttccattttttcttCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113867 lncRNA downstream 24368 13325986 ~ 13385205 (-) False LOC120564547
TU113825 lncRNA downstream 84315 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA downstream 85400 13322182 ~ 13324173 (-) False G84536
TU113809 lncRNA downstream 137044 13271252 ~ 13272529 (-) True G84528
TU113832 lncRNA downstream 159775 13246828 ~ 13249798 (-) False prr5a
TU113907 lncRNA upstream 15458 13434739 ~ 13444612 (-) True G84585
TU113916 lncRNA upstream 225136 13644417 ~ 13644848 (-) True G84592
TU113923 lncRNA upstream 264543 13683824 ~ 13685469 (-) True G84597
TU114089 lncRNA upstream 653352 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 803916 14223197 ~ 14232530 (-) False LOC120564470
XM_039808969.1 mRNA downstream 21587 13386741 ~ 13387986 (-) True LOC120564184
XM_039809639.1 mRNA downstream 81448 13325973 ~ 13328125 (-) True LOC120564547
XM_039809683.1 mRNA downstream 108252 13273770 ~ 13301321 (-) False LOC120564570
XM_039807855.1 mRNA upstream 98402 13517683 ~ 13520737 (-) True LOC120563596
XM_039807854.1 mRNA upstream 155821 13575102 ~ 13618786 (-) False mafb
XM_039809916.1 mRNA upstream 252675 13671956 ~ 13682237 (-) True si:dkey-234i14.6
XM_039809652.1 mRNA upstream 266917 13686198 ~ 13693332 (-) False prpf18
XM_039809651.1 mRNA upstream 266917 13686198 ~ 13693332 (-) True prpf18
TU113814 other downstream 178478 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1265027 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1521175 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2746895 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2977429 10427562 ~ 10432144 (-) True G83826
TU113910 other upstream 154550 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 611823 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 803969 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1082679 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1547174 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile