RNA id: XM_039808414.1


Basic Information

Item Value
RNA id XM_039808414.1
length 3844
RNA type mRNA
GC content 0.50
exon number 22
gene id elapor2a
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14903173 ~ 14919276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggtgatgatgaggCCGCCCTGGAGCGCACAGTCTGAGGATAATCGCAGGTGGTAAAGGTTACAATCTGCCGACAAGAGGCGACAGAAGCAAATGTCGATCTGAAGCAGAAATGTTTCTGGCTCAGGTTTAAGATACAATTATCCATCCTGGAtcgaggttgttgttttttctccccCTTGATGCTCTACGATGCGGTCCTCGGCTTGGTTCGTGGCCAATTGCGCTCTCATCCTCTGCACGCTCCGGTTGATTGACGGGGCCAACGGACTGCGACTGTGTAGCGAGACGGACTACTACTATGAGTACACAGAGTGTGACAGCACAGGATCTCGGTGGAGAGTGGCAATCCCGCAGAGGCCCGGGGCCTGCACTGGACTACCAGAGCCAGTACGTGGCACAGAGTGCACCTTCTCATGCAAGGCTGGGGAGTTCCTTGAGATGTCGGCTCAGGAGTGTACCCAGTGTGCAGCAGGAAGCTACTCCCTCGGCAGTGGCATCCGCTTCGACCAATGGGATTCCATGCCTGCTGGATTCAGTagcctggcaacctcactgGAAAACAGTCCACACGGAGATGACAGGCCCACCTGCAACAGTTCTTCCTGGGTGCCTCAAGGAAACTATCTTGAGTCCAACAGGGATGAATGCACAGTCTCTCTCATTTATGCTGTTCATCTGAAGAAAAAGGGCTCTGTCAGCTTTGAGTACCAGTATCCAGACAACAATCTGCTATTTGAGTTCTTTatcCAGAATGACCAGTGTCAGGAGATGGATCAGTCTGCTGATACAAAGTGGCTCAAGCTCACCAATAATGGTGAATGGGCAACCCATACGGTGAACCTGAAATCTGGCACCAACATCCTGTACTGGAGGACACGTGGGGTCCTGATGGGGAGCAAAGGGTTGAAGCCTGTTTTGcttaaaaatgttcaaatagAAGGAGTCGCCTACACATCGGAGTGTTTCCCTTGTAAGCCGGGGACGTTCAGCCGAGTCCCAGGCTCCACCAAATGTGAACCCTGTCTTCGGGACACCTACGCTGGCCACGGTGCCAGCTCCTGCACCCCCTGTAACACTACCACTCAGTATGCAGCCCAGGGATCTGCGATGTGTAAGGACAGACCTCCATGTTCCAGGAAGGACTATTTCCAGATCCACACAAAATGTGACCACGAAGGCAAGACGCAGGTCATATATAAGTGGATTGAACCTAAAATCTGTCTGGAGGGTGTGACTGGAGCTGAGTCATTGCCTCCAAGTGGAGAAAGGGAGCCCTGCCCCCCCTGTAACCCCGGTTTCTATAACAATGACACGGCCACCTGCTCCCCATGCCCACCTGGGACATATTCTGATGGGAAGAAACCATGTACGCAGTGCCCAGCAGGCACTGAGCCCTCCTTGGGTTATGAGTTTAAATGGTGGAATATTCTTCCTCCAAACATGAAGACCAGTTGTTTCAATGTGGGCAACAACAAATGTGACAATATGAATGGCTGGGAGGTGGCCGGTGATCATATCCAGAGTGGAGCAGGAAGCTCAGATAATGATTACCTCATCCTCAACATCCATATTCCTGGCTTCAAGCTCCCTACGTCAATGTCAAGCCATTCTGCGACGGAGTTTGGTCGCATTACATTTGAGTTTGAAACTGTGTGTGTAGCTGACTGTGAGCTCTACTTCATGATGGATGTAAACAGGAAGAGTACTACGGTGGTGGAATCAtgggagaaaacaaaaacaagacagaCCTACACACATGTTATGACAAAGAATGCCTCGGTTTCCTACACATGGGCTTTCCAGAGGACTAACCAACCTTCAGATgTACGCCGGTATGTCAACGACGTGGCGCGAATCTACTTCATCTCAGTGAGTAACGCTGTCGATGGGGTGTCCTCTGGGTGCCGGGCTTGTGCTCTCAGCACCCAACCCTCCAGCTCTGCGTGTGTACCTTGTCCACCTGGACACTACATAGACACGCGCACCAGCCAGTGCACAGAGTGTCCACCTAACACATACCTCGTCCCTCACACCACACCGGGTCCCGACGCCTGCAAACCCTGCGGACCGGCCAGCAAGTGCGACAAGgACCACAGTTTTTGTTACAGTGACTGTCACTTCACCTACGCAGAGGGTAATGCCACTCTGACTTATGACTTCAGCCTCCTTGGGTCTGTAGGATCACTGATGAACGGTCCGAGCTTTACCTCCAAAGGAACAAAGTACTTCCACCACTTCAATATCAGCCTGTGTGGAGGAAAGAGTCAGTTGGCGGAATGCACAGACAATGTAACAGACCTATCCATCACGGACTCCCAGAGAGAGAACGGCGAGGGAGCCAACGCTGTCAAGACCTTCATCTGTCAGTCAACAATAATCCCAGCTACTGGACGAGGCTTCCACACAGCGCTCGCCTCGCAGTCCATTAACCTGGCTGACACATTACTTGGAGTAACAGTAGAGAGTACACTTGATGGAATAAGGGCGAGATCAGAGCTGTACCCCCAGACCTCCAAGAAAGTCCCTGATGTCAACTTCTACTACAGGTCCTTGGAGGCGACCTCATCTTGTGAGTCAGGTCGGAGCGCAGTGGTGACACTTCGCTGTAACCCAGAGAAAAACGCTAAAGGAGAGCTCTCAGTTCCCAGCCAGTGCCCTGCGGGAACATGCGACGGCTGCACCTTTCATTTCTTATGGGAGAGCTCAGGAGCTTGTCCTACATGCACAGAGAGGGACTACCATCAGATAGAGGGAGCCTGCAAGGGAGcacagcagGACCTGCTGTATGTGTGGACTGAACCGAAGCTGTGCATAGGAGGTGTGACCTTGCCTGAAAAGGAAACGTTGCCATGTGAGGGCATGGAGTTCTGGGTACGGCTCGGTGCAGGGCTGGGCGCTTTCACCGCAGTGCTGCTTGTCATCCTCATCTGCTACTTTTGGAAGAAGAGCAAAAGGTTGGAGTACAAGTACTCCAGGTTGGTGATGTCTGCCAATAAGGAGTGTGAGATGCCAGGAGCTGACAGCTGTGctgtgatggagggagagaacGAGGGAGACATGGAGGATGAAATTGTGTACACAAAACCCTCTCTACTTGGCAAACTCAAAGCCATAGCATCCAAGGGGAACGGAGAGCACTATGAACATGTGCAGCTAAACTCATCTCATTCGAAAGCGTTGGTATGGAGCTAGAGAGGTGGTAAAGTGAGGGGAGAGATCGCACCCTCAAGAAATTTTCCACTGAATGACCCCTTTAACCAACCACCCCCTTTATGAGCTCTGGTACCTGGAATACCaactgtgtgtacacacacacacacacacacacttcatgcaCCTAGAGCCAGGTTCAGAGAAGTCACACGAACATGGTGGCCTTAAAGCTCGGTACGACAGAGCCGTCCAACTCAAAGCATAGTACTGTGAAGCTGGTGCGTGAGATAGACACTTCCTGGTAATATTCTGATTCAAACTGATGTCAGAAAGTCTATTAGAAGAGCTCAGGGTAAGACAAGGACCTATTTGATTGATGTTCTGGTTTATATTAATTTCAGTCTGTGTAGTGTCTGTTTCTTTAGACAGCCATGGTGTCATTTGCCATTAGGATCAGCATGGTGAGTGTGTATTCATTTCCCATTGACGTTTACACAGACTGCTCTATATTGTGTCCATATAAAGCCTCTATCTTCTCATctgtttgttcttttgcttagTTGAAATTATTGTAATGAGGAGAAGCGTTCTGctgaccaattaaaaatgaagatgTCATACTATGCGGATGAGGTTGGGGTGTTGACTGTCCATGTATGttaaataaattatgatgtatttATGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114433 lncRNA downstream 51150 14851720 ~ 14852023 (-) True G84971
XR_005640144.1 lncRNA downstream 95105 14807411 ~ 14808068 (-) True LOC120564774
TU114412 lncRNA downstream 335904 14558458 ~ 14567269 (-) True G84960
TU114175 lncRNA downstream 537775 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 618211 14283896 ~ 14284962 (-) True LOC120564348
TU114375 lncRNA upstream 34852 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 34852 14954128 ~ 14955407 (-) False G84948
TU114472 lncRNA upstream 138449 15057725 ~ 15057929 (-) True G85007
TU114476 lncRNA upstream 143335 15062611 ~ 15063137 (-) True G85011
TU114507 lncRNA upstream 259064 15178340 ~ 15179173 (-) True G85027
XM_039809864.1 mRNA downstream 108043 14757979 ~ 14795130 (-) True sema3d
XM_039809865.1 mRNA downstream 108044 14757979 ~ 14795129 (-) False sema3d
XM_039808785.1 mRNA downstream 195055 14683447 ~ 14708118 (-) True sema3ab
XM_039808787.1 mRNA downstream 235673 14642838 ~ 14667500 (-) False sema3e
XM_039808786.1 mRNA downstream 235674 14642838 ~ 14667499 (-) True sema3e
XM_039808185.1 mRNA upstream 42584 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
XM_039808419.1 mRNA upstream 54005 14973281 ~ 14990514 (-) True LOC120563915
XM_039808420.1 mRNA upstream 85025 15004301 ~ 15012816 (-) True LOC120563916
XM_039808233.1 mRNA upstream 132574 15051850 ~ 15057130 (-) True dnaja2b
XM_039809927.1 mRNA upstream 179350 15098626 ~ 15105742 (-) True lmf2a
TU114408 other downstream 395972 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 666221 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 869958 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1285277 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1672078 13230617 ~ 13231095 (-) True G84530
TU114449 other upstream 47179 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 146763 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 559706 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 595502 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1520098 16439374 ~ 16440965 (-) True G85321

Expression Profile