RNA id: XM_039809652.1


Basic Information

Item Value
RNA id XM_039809652.1
length 1838
RNA type mRNA
GC content 0.42
exon number 10
gene id prpf18
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13686198 ~ 13693332 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAACTTCCGGTTTAAGTGTCaagtggtagctagctagtttaGCGTTGTTGCGAAAGTcttagctagctacatgtgtGGTTATTTGTTGAAATAAACGAATAACGACCACAATTGAAAATGGATACACTGAAAGCTGAGATCTTAAGGAAAAGAAAACTCATCGAAGACAAACAGCTTGTTGATGGCTCCAAAAAATTCTTCAAAAGGTCTGATCTTGCACGCATGGAACAAGAAGACTACTTCATAAGATGTGGATACAAGATTGATAAGAAAGAAGATGATGAGCCATCCACCTCAGCTAATCCAGTGTTAGAACTGGAACTAACAGAAGAGAAGCTGCCAATGACACTGTCGCGACAGGAAGTAATTCGCCGGCTTAGGGAACGAGGGGAACCAATCCGACTGTTTGGAGAGTCCGATTATGATGCCTTCCAGAGACTCAGGAAGATTGAGATTCTGACCCCGGAAGTAAACAAGGGCTTGAGGAATGACCTAAAAGCAGCCATGGACAAGATTGATCAGCAGTACCTAAATGAGATTGTTGGAGGAACAGAGCCAGGAGAAGTGGACACACAGCACGACCTGAAAGTCCATGAAGAAAACACCACTATAGAAGAGTTGGAGGTTCTTGGTAAAACCCTAGGCACAGGAGATGATGATGGAGACCAGGAGCTTATCGACAAATTTTTGAGGTTTCTTCTTGGTGTTTGGGCCAAAGATCTGAACAGCCGAGAGGACCACGTGAAGCGAAGTGTTCAGGGCAAGCTGGCCAGCGCAACTCACTCACAGACTGAGTCTTACCTCAAACCTCTCTTCAGGAAGCTCAGGAAGAAGAGTTTACCAGCTGACATCAAAGAGTCAATCACGGACATAATTAAGTTCATGTTGGAGAGAGAGTATGTCAAGGCAAATGATGCCTACCTGCAGATGGCCATTGGTAATGCTCCGTGGCCTATCGGTGTGACCATGGTGGGTATCCACGCCCGTACTGGGCGAGAAAAGATCTTCTCCAAGCATGTGGCCCATGTGCTCAACGATGAGACACAGAGAAAATACATCCAGGGACTGAAGAGGCTAATGACTATCTGCCAGAAACACTTCACGACTGTGCCATCAAAGTGTGTGGAGTACAACGCTCTTTAACTTGTGACTTCAGCTTAATTTAGGCTAAAGCTGTCAGGTCAGTTGTATCACAATCCGAAATGggatttttttcacagcagcTCAGTTATAGGTTCTGGCATGACTGGTTGTCAAAGTCATGTATATCAAGGGCCTTCAAGTACATCTGCATTTTGTCGGGGATAACAGTTTGAGAAAAATCATTATTTAAACGGAATTTGGGTGAGTCAGACCTTTTTGTATACAGTCAGAATTTTGCTCACTTATAAGTGAAAATTTAAAGAGTAGACTTGTCTTTGTGAACTACTGGGAAAAATGATGCACTTGTTAtgccaataatagtcacatGACTTCAGTCCTACTTAAGAACATGTTCATGGATGCTCTGAGGAGTTCCATCCCATTCTTGCAGAAAAAAAGccttcacttttcttttctttttttactactCTTGTTCTGTTAATATTGGCTTTCACAAGTTTTTCAAAGATTTATTGTCATGATGTGGGAAACAAAGTGTCATTTACCTAGGAAGATCCAGTAATGTAAGTTTTATTACACCTGAGACATGACAGTTATTAACTCCTTATTGACGTGCTAAAATCAAAGACGATTCTGTTCTATGTGCATGTTTGAGTTTTAGCAGATTATTAAACTAATAAATGTGTCCCTGTACTATCTTAGTAAGAAAATAAAGTGTTGCCTTGTTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113923 lncRNA downstream 729 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 41350 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 241586 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 300993 13325986 ~ 13385205 (-) False LOC120564547
TU113825 lncRNA downstream 360940 13322182 ~ 13325258 (-) True G84536
TU114089 lncRNA upstream 379301 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 529865 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 529918 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 529918 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 544250 14237582 ~ 14238451 (-) True G84751
XM_039809916.1 mRNA downstream 3961 13671956 ~ 13682237 (-) True si:dkey-234i14.6
XM_039807854.1 mRNA downstream 67412 13575102 ~ 13618786 (-) False mafb
XM_039807855.1 mRNA downstream 165461 13517683 ~ 13520737 (-) True LOC120563596
XM_039808131.1 mRNA downstream 259537 13409573 ~ 13426661 (-) False nfat5a
XM_039807977.1 mRNA upstream 16654 13709986 ~ 13722388 (-) True cpt1b
XM_039807980.1 mRNA upstream 29451 13722783 ~ 13726359 (-) True LOC120563649
XM_039807981.1 mRNA upstream 29451 13722783 ~ 13726357 (-) False LOC120563649
XM_039807983.1 mRNA upstream 33856 13727188 ~ 13740100 (-) False chkb
XM_039807982.1 mRNA upstream 33856 13727188 ~ 13737175 (-) True chkb
TU113910 other downstream 68302 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 455103 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1541652 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1797800 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 3023520 10644032 ~ 10662678 (-) False scamp2
TU114030 other upstream 337772 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 529918 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 808628 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1273123 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 1372707 15066039 ~ 15073350 (-) True G85014

Expression Profile