RNA id: XM_039810361.1


Basic Information

Item Value
RNA id XM_039810361.1
length 2548
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC120565046
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30481514 ~ 30485822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGCAGGTAGACGAGCAGCAGTGGAGCACTTAGCCTTTTGGGACCACATGCTTGTGTGTCACTTTtctaaattatcttttaaaaatgGCAGGAACAATCATAGAGAACATGAGCACTAAGAAATTGGTTTTCTTTGGTttctttattcttgttttacaAGTTCTTTTCATCATGGTTGGAGCACTAATCGCTCCCAGTCCCACCAGTGCTATTCGCTACTTGGCCACCAAATGTATTAATCGCCACAGGGCACGTGCCTGGCTCGTGCCGTGGGGATCAAATCGGTGCCAGCAGATCCACAGTTTTGATGAGCCTCTGGCAAAAACACTGGATCCCAACGACATTGTTTTTGCTGTGCACATACCTCTTCCCAACAAGGAGATGAGTCCCTGGTTTCAGTATATGCTTGCTGTTCTACAATTTGACATTGCATTTAAAATGATCAATCAGATTGAAGATGATGCTATCATCACCATTGATGCTGGCCTTGCATACAGGGATGATTTGATATCTGAGTGGACCACAAAGTTTCACTCAGTGGAGCAAAGGCCACTCAGGTGCATATTTGCAGTTTCCAAGACATATAAAAATGAAGGCCGTTTTTATCACTGTGACCCCATACCATTAATGGAACTGGGAAGTGTGGCCCACAAATATTTTTTGATTAACCTTCGCTTGCCAGTGAATGACACATTGAATATAGGAATTGGAGAAATAAAGGACATCCATTTAGTGGGCATACACCAGAATGGAGGCTTCACTAGAGTGTGGATCAGCATGAAGACTATGTTCAGTCCCTGGATATTTGTGGCAACAGTTTGGTACTGGCACAGGATCAGTCTCATGGCAAGACATCCAGTCCTTTTAGAAAAGGTGATTTTCGCCCTGGGTATTTCTGTGATGTTCCTGAACGTGCCGGTGGAGTGGCTCTCCCTGGGCTTTGAGTGGACGTGGATGCTGCTATTTGAAGATGCTCAACAGGGCGTCTTCTACTACACACTCTTCTGTTTCTGGATCATCTTCTGTGGCGAACACCTTATGGACCAAAGTCAGAGGAATCGGCTTTCAGTGTACTGGTGGCAGGTTGGGCTGGTGATGTTCAGCTCATCTATTCTTCTTATATTTGACCTGAGTGAAAGGGGGGTTCATTTGACCAACCCTTTCTACAGTGTTTGGGCATCAGAAATTGGGACGAAGGTGGCAATTACTTTCGTTATTGTGGCAggaatttctgtttgtctgtatttcctCTCTTTGTGTGGCATGGTGCATTGTGTGTTCAGGAACATTGATGGGAAAATAAACAAATTTCCTGAAATGCCAGAGGCTAGGAGACTGCGTTATAAGGGTATAGTCTTCAGGTTCAAGTTTTTTATGCTGGCAACTCTAGCATGTGCAGCAATGACTGTCATCTTCTTTATCCTAAATCAAGTCAGTGAGGGGCACTGGCACTGGGGAGACCACACTCTCCAAGTCCACAGTGCTTTTCTCACAGGGACCTATGGCATGTGGAACCTGTATGTTTTCACCGTTATCTTCCTCTATGCGCCCTCCCACAATTACAACAAAAGAAAGTCAGGAGATGGTCAACAAACAGATGTGCTTGAGAAGGCAGAAAGCCAAGAGACCCAGCTGACATGTGGAGAGCATGGGCCGACCAAGACCTACAGGATCACTGGGAAGGTGACCGAGGAATAACTGCcagaaaatcattttttgttgttgttttattttgttatactGTGTATACTATTCTTTTGTTTCTGAAAAGATTTTAACCACATTACAAACACTGTAGGACTGTCTAGAATAATATCACTTTAATTGCAGTGAAACTTGTGTGACTTGAGATGTAGATGATAGATTAGCGATGCAACTTCCATGGGCCTCCATGTTCACTCAGAGGCATTTTAAAgggtgattttattttttgtcaaccTGGAGCCTATTTTCCAATGCATTAGAGTCTAAGTAACTAATGTGAACACAAACCATTGGATTAGTGATGCATTAATGTCTAAGCgttactttaatgttgcagctggtgaaGGTGGGGctaattttaattactttatatactgctgggtagctAACCCTATCCTAATATATTATAATGTATTAGTTAATCTAAGTACTAAAAgctgttaaataaatgtagtggagtaaaaggtaGTAGATAAagtaaatactcaagtaaagtacacgTACCTCCATTTTATATTACTTTATACATATACTCCACGACATttgagagggaaatattgtacctTTTAATCCACTATGTTTATTTGGAAGATATAGttattacttactttacaaattaagattcaACATATGATAATCCTTTAAAATACAATGCGGAGTTGGGCTCCTTGTCATTATTATTAGATGCTGTTTGCATCCAAGAGACATTTTCCCTCCAAACCTCTCAGGTGGTTTCATTTAAATATCTGTTTGAGGCCCACAGAGGTACAATTATCCCATGTTTTATATTAAAGCAAATATTCATtactaaaacaaaataataaaaataatataaatctgTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134141 lncRNA upstream 18125 30462560 ~ 30463389 (+) True G99461
TU134066 lncRNA upstream 91875 30388821 ~ 30389639 (+) True G99406
TU134037 lncRNA upstream 136340 30211483 ~ 30345174 (+) True G99379
TU134171 lncRNA downstream 35823 30521645 ~ 30522066 (+) True G99488
TU134177 lncRNA downstream 43004 30528826 ~ 30529088 (+) True G99493
TU134178 lncRNA downstream 43787 30529609 ~ 30529820 (+) True G99494
TU134215 lncRNA downstream 194684 30680506 ~ 30680716 (+) True G99527
TU134216 lncRNA downstream 207817 30693639 ~ 30694005 (+) True G99528
XM_039812227.1 mRNA upstream 134 30477831 ~ 30481380 (+) True dr1
XM_039811703.1 mRNA upstream 20776 30450701 ~ 30460738 (+) True scinla
XM_039811702.1 mRNA upstream 52258 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039811588.1 mRNA upstream 78502 30397268 ~ 30403012 (+) True LOC120565665
XM_039810394.1 mRNA upstream 167042 30311202 ~ 30314472 (+) True LOC120565064
XM_039812323.1 mRNA downstream 44146 30529968 ~ 30535873 (+) False gng12b
XM_039812322.1 mRNA downstream 44896 30530718 ~ 30535873 (+) True gng12b
XM_039812426.1 mRNA downstream 55535 30541357 ~ 30559154 (+) False sec16b
XM_039812424.1 mRNA downstream 55537 30541359 ~ 30559154 (+) True sec16b
XM_039812367.1 mRNA downstream 241191 30727013 ~ 30794829 (+) False LOC120566104
TU134127 other upstream 52223 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU133929 other upstream 816424 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1707004 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2335189 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2397127 28027972 ~ 28084387 (+) False pip5k1ca
TU134237 other downstream 324696 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1136876 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1143994 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1147743 31633565 ~ 31643446 (+) False LOC120564930
TU134797 other downstream 2389560 32875382 ~ 32878615 (+) False nlgn1

Expression Profile