RNA id: XM_039811417.1


Basic Information

Item Value
RNA id XM_039811417.1
length 1459
RNA type mRNA
GC content 0.47
exon number 6
gene id si:ch211-247n2.1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34031890 ~ 34063575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAGACAGCAATGAAGgaATTGCTCAGCCGGcggcaatctgaaatggaatgaagcccaTTTGCGGCAGACAGCGCTAAACAGGAGTCGAACGagtccacccacccaccccagAAGAACTACAGGTTCAGGTGGGTCAGCACCTCTGGCAGCATCGGTGGACTACAGTCCCCACATTCCTCAGATAGGATGTTTCTGTGGGCAGGAAGTAAAGCAACAGATGGAAGAAGTGACCGCAGTTCCTTCTACCAGAAGTTCCGTGAATATGATGTCCTGGACAAGAGGAAGACGATGACAGCTCTTAGGGCAGGAGAGGACAGAGCCATACTGCTGGGCCTCAGCATGGTCGTCTTCTCTGTCATGATGTACTTTGTCCTGGGAATCACCATACTGCGCTCTTACTCTGACAGCGTGTGGACTGATGAGGCTAGCTGCACTATCGTGAACTCCACCATCGTGGGCGATGTCAACTGTTCATACAGCTGTGGATCAGAGTGCAGGAAGAGTTCCCGTTACCCGTGTCTCCAGGTCTACGTGAGCCTCAACTCCTCAGGAAAGGTGCTACGACTGTTGCACAACGAGGAGACGCAGGACAGCAACCCTGAGTGCTTCTACTTCCCAAAGTGCCGTAAGGACTATGCAGCCACGCATTTGATCGTTCAGAACATTTCTGAGCATCTCCGGTCTCAGCACACAGTTCAGTGTTTCGTGGACCCTACAGACAGAATTGATAGTGCCATCCTGACACAGATCTACGGTCGGGTCGCCGTCTTCCACTCCCTGTTCTGGCCAACCTGCACCTTGATTGTAGGAACCATTATCATTGCCATGGTGAAGCTGACCCAGTACCTGTCCATTATGTGCGAGCGACAAAGCCGCATTAAGAAGTGAAGGAAGTTCAAAAGAAAGTTCCTGTTATATGGACATGGGGACAACTGAACCAGCTTCATGGGGgcaagacagaaagacaaagaggagaAAGCTGTTTCACGCCCAGAAGTGGTCTGTCTGTGACAGCTGGAATGTTGGAGTTCAAAGACATGCATCAGTGACAATCTAAAAGCAGCTAAAACGAGAAGCATATACCTTTGAGACAGTGTGTAGCAAgtctatttcccaaaatgttgaactatttcttTGAAAGGGGACATATCAAAAATACTGTTTTTCAGTGGTTGTGCACATACCTTTGTGTATCTCGGGTGCCTACCAACCCTCAAACTGTAAAATAAGACAACCCAGTTAGTTGTTTGTGGGCTGCCTAGATCTATACTAGAGGTTCTTAATGTTTTCTAGCCAATGTTGCCCTTACAAGATAGAGAATTTTCCGGGGACCCCCTCACGTATGTcctgtagcctatttttacacTTGTATAGTCTTAGTATGGATTTCTTTGATTAGAACATAATCTGTGAACTATCAtagattttaaattaaaatataattttttacaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134826 lncRNA upstream 842184 33204180 ~ 33204746 (+) True G100043
TU134811 lncRNA upstream 967089 33078937 ~ 33079841 (+) True G100028
TU134794 lncRNA upstream 1160781 32881680 ~ 32886149 (+) True G100013
TU134775 lncRNA upstream 1453745 32592939 ~ 32593185 (+) True G99994
TU134768 lncRNA upstream 1539720 32436847 ~ 32507210 (+) False nlgn1
XR_005640305.1 lncRNA downstream 157048 34220623 ~ 34222131 (+) True LOC120565927
TU134936 lncRNA downstream 157087 34220662 ~ 34222122 (+) False LOC120565927
TU134947 lncRNA downstream 240515 34304090 ~ 34304346 (+) True G100148
TU134967 lncRNA downstream 386706 34450281 ~ 34450515 (+) True G100161
TU134961 lncRNA downstream 438989 34502564 ~ 34504367 (+) True G100159
XM_039812286.1 mRNA upstream 171834 33772446 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812284.1 mRNA upstream 171834 33772448 ~ 33875096 (+) True si:ch211-51h4.2
XM_039812285.1 mRNA upstream 171834 33772450 ~ 33875096 (+) False si:ch211-51h4.2
XM_039812233.1 mRNA upstream 284011 33243213 ~ 33762919 (+) True LOC120566032
XM_039811895.1 mRNA upstream 1168297 32436860 ~ 32878633 (+) True nlgn1
XM_039811408.1 mRNA downstream 2540 34066115 ~ 34093575 (+) True LOC120565538
XM_039811409.1 mRNA downstream 2540 34066115 ~ 34093575 (+) False LOC120565538
XM_039811410.1 mRNA downstream 2540 34066115 ~ 34093575 (+) False LOC120565538
XM_039811411.1 mRNA downstream 2541 34066116 ~ 34093575 (+) False LOC120565538
XM_039811929.1 mRNA downstream 317172 34380747 ~ 34384027 (+) True LOC120565861
TU134878 other upstream 168599 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 777770 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 1168315 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 2403484 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 2415429 31629816 ~ 31631501 (+) True G99803
TU134982 other downstream 441068 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 2163512 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 2409963 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 2431909 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 2469151 36532726 ~ 36534539 (+) False smim24

Expression Profile