RNA id: XM_039812035.1


Basic Information

Item Value
RNA id XM_039812035.1
length 3389
RNA type mRNA
GC content 0.47
exon number 11
gene id tmem161a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27577974 ~ 27584940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAAGGCAGCGCGACACCACTACCACATCCGGGACATTCAGCAGTTTCACATGTCAGTTGGTTCAGCTGTCAAGACTTTCATGCATGTGAAGAAGCTCCGGCATCTATTCTGGTTTTGACCACGTCTTTCTTTCGACAAAAGAGATGGCGCTGATGGGAATTCAGCTGGTGGTCAGCTTGCTGGCTGCCAGCATTATGCAGAGGATGGCTCCACACTGCTCATTTGCACGCTGGCTAATCTGCAATGGCAGtttgTTCCGGTTCAAACACCCGTCAGAAGGAGAGCTGTGTGCATTGGCTGGAAAGCAGATGCCTAAACAGACCAGGAGAGACAGGAGACAGAATGGGGAGAGCAAGCCTCTCACTGTGCCTAAAGACATCGACCTTCACCTGGAGAAAACTCCAGTCAACGCCATTGACGCTCTTGTGCTGCGTTTTTTCCTGGAGTACCAGTGGCTGATAGATTTTGCAGTCTATGCAACAGGTGTCTTCCTGTTCACGGAGTGTTACTACAGTGTTGTGGATGCCAGCAAAGAGGTCAATATCGGAGCCATCTGGTGTGTCTTGACTGTTCTCTTCAGTCTAAAGACCCTTCACACTCTGATGAGCCACTACTTCCGCTCTGAAGAGGGCGGCGAGCGCTCGGTGTGCCTTGCCTTTGGCTTCCTGTCTCTGCTCGTGGCCATGCTGGTGCTGGTGGTCAGAGAGGACTACCTGGAGTTCGGCCTGGAGTCGGGCTTTTCCAACCTCTTTGACAACTTGGAAGTCTTTGCCAAACAGCAGGGCTACGCTGACTGGTCAATCCCAGTGACCAAGCTGACAGTGAAGCTCGTTCTGGCTGCTATCTGTTCTTACATTGGGGCTCTCCTGGCCTTCCCCGGCCTGCGAATGGCTCAGACTCATCTAGACGCTGTACAGATGAACTCCGACCGACCACTCATCCAGATTCTGCTGCATATGAGTTTCCTGTCTCCAGTCATTGTGCTGGTTCTGTGGGTGAAACCCATTGCACGGGACTTCCTGGCCAATGCACCTATGGGGAAGAACTCTGTCACATTAGTTTCCAGTGAAACATTTGACAGCATGCGCCTGTGGATCATCGTGGCGTTGTGTGTGCTGCGGCTAGCGCTGACTCGTTACCACCTGCAGGCCTACCTCAATCTGGCTCAGAAGTGGGTAGAGCAGATGAAGAAGGAGGCGGGGCGTATCGCTGCTATTGACATTCAGAGGAAGGTCACACGTATCTTTTGCTACCTGACTGTAATTACTCTCCAGTATCTGGTTCCAGTTTTTCTCATCCTGTTCTCCACGCTGGCACTCAAGGCACTAGGGGACTTTTCCTGGGTGGCCGGTGCGGAGCAGACCCCCGCGGTAACCCCAGCACTGGTGATGCCCACAGCAGCGCCCGTGCTGCCCGGGGGTCTCGACGAAGATGACGAGGGGATGGAGGATATGGAGGAGGACATCCAGGCCACAGTGGCACACCTAACCGAGGCCTTCGCAGCGCTGCGGTCCGTCCTCACTCCACTTTTCTTCCGGGGTTTCTTCGCCTTCCTGACGTGGTGGGTGGCTGCCTGCCAGGTCATCAGCTCTCTGTTTGGAATCTACTTCCACCAGTACCTGATGCAGAACTAACTGAGGGAGACGGGAGTGCCACACGGTTCTACTATCCTTCGCAACAGCATAACAACAGATAAAGGGgacatttcattaaaaacacGCAAATGCAGACCGAATGCACTCGTTTGTGGCCAAAACAGAAGTTTTGGTCAAGGTTTGTTGCGAGGAGACAGGTGATGGACACGGTCTGTTGCAATATTGGTTTGTTGCCCTTAGGGCTTTTTGTGGCCAGGAGGCTACTGGTATcaacaacacaaatacagagaGAACTACTGGGGTCTGTTTTACAAAGCAAGTTCAACTTAGTCTGGCTCTCTTTgggttacccggcttcaccgaGTCTTTACATTGGCGGCCTTTGACAACCAGTGCCGCAAAGCTGGTTTTCACCTGGCTCAGTGAACTCTTGAGTTAACTCTGGGTTAACTGATCCAGCTACGGCTGCGTTCGCGTGAAAGAGGCACAGCTTTTGATTGCATGCAACATCAAAAGAACCGTGAGAGGATTACGTAATATGACACAGAACAACTCGCAGGGAAATTAGGTTATTGTGCTAGTCAAAGGTGATATTCAGCGTACAAGTAGAATaggatttaagaaaaaaaaaagctttagaaATAAGAGGACCTATTTCTAAGTATGGCTATATATAAGTGTAATGCTGTGTTCCCACTGCTGTTTTGCACCCGACAAAGCATGAATTCAGACTTTTTACAAATTTCTATCCGTTGATTGCAATTAACAGGAGCAGGTCAGCTGTGCAGCATATAGATTACCATGGTGGTCTACCTTGGCTGAACGTGAGCCAGCTTTGTGATACCGGAGAACGACTTAAGCCCAAAGATATCCAGCTAACCCACTTATCTCGCTTCATGATACAGGCCCCCTGGTCATCGTCCAGCTGTTTCAGTGGAACATTTTCCTGCAACTTTTCAGATGTTTCTATGCCAATGTTACCTGAACTGTTCCTAATAGAACATTTATTAAATGGTACCAAGGTAGGTTTTAGGCATTACTGCCTGTGTAGAtaagactttttatttttgtgaggGACTCTTTGTCCCCCTTAAAGAACCGATTCAAGAGTGCTAAATGGTTTGTGTTATCTTTTTCTGCTGAAAGCTTTTGATTGAAAACGTGTAGTAAAGCTTCTGATCCATCCTATTACATTAAACGCCGCTGAACGTGAATCCTAACTGTGTTTGTGGCTGCGTATCGGCCAAGAACCGGAGAGATTTAGCTTTTATCTAAGGAGTTTCCTTCAGTATTCCTAAGTGCCTGGGAGCTCAGGGATTTTGAGtccattttaaaatgtcctttCTCCCTAATCATGCCGTATTTAGAATGCCGTATGTTAtagcttttattttcaaacactACTCACTGGCAGCATTTTTAGTTGCAGTCTCTTAATTAGCTCACATCAGTTTTATTTCGCTGTTTTTATTGCCAATTAGTCATGTACATGTCAGATTTAGCAAAGCCTACTTTTGTGTCagtggattttatttatttatttatgatacatcGACTCAAATAAcgtttgttgttttaaaaatgatAGAGATGATGTAATTCTGTTTGTGGCCATTTCTGattttaagtgtgttttttttttttagatagttGAATTGAATGCTCTGAAATCCTTGTACTGTGAACTTTATATGGAAAGTGTTACTTTTCTTCTGAATGCATGGTGTGCAAACTTTTGGCTGtaatctgacatttttgtttgtggggctcaataaaacatttaatattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133173 lncRNA upstream 79087 27498223 ~ 27498887 (+) True G98685
TU133149 lncRNA upstream 173137 27401644 ~ 27404837 (+) True G98663
TU133140 lncRNA upstream 182691 27394321 ~ 27395283 (+) True G98654
TU133139 lncRNA upstream 185008 27392273 ~ 27392966 (+) True G98653
TU133138 lncRNA upstream 197837 27379665 ~ 27380137 (+) True G98652
TU133215 lncRNA downstream 1485 27586425 ~ 27587108 (+) True G98723
TU133263 lncRNA downstream 74756 27659696 ~ 27660061 (+) False ncanb
TU133262 lncRNA downstream 247299 27832239 ~ 27832822 (+) False ncanb
TU133269 lncRNA downstream 263793 27848733 ~ 27848938 (+) True G98763
TU133272 lncRNA downstream 270736 27855676 ~ 27859123 (+) True G98766
XM_039811355.1 mRNA upstream 57633 27513155 ~ 27520341 (+) True LOC120565509
XM_039811440.1 mRNA upstream 200920 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811509.1 mRNA upstream 430818 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA upstream 430818 27120699 ~ 27147156 (+) True midn
XM_039811282.1 mRNA upstream 477718 27090223 ~ 27100256 (+) True atp5f1d
XM_039810829.1 mRNA downstream 21020 27605960 ~ 27611082 (+) True tmem221
XM_039810830.1 mRNA downstream 27912 27612852 ~ 27615467 (+) True rfxank
XM_039810832.1 mRNA downstream 27994 27612934 ~ 27615467 (+) False rfxank
XM_039810831.1 mRNA downstream 28440 27613380 ~ 27615467 (+) False rfxank
XM_039811768.1 mRNA downstream 74756 27659696 ~ 27832855 (+) True ncanb
TU132947 other upstream 782235 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1558603 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1845797 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2030885 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2704100 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 443032 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 552329 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1187448 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2078693 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2842563 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile