RNA id: XM_039812161.1


Basic Information

Item Value
RNA id XM_039812161.1
length 3031
RNA type mRNA
GC content 0.53
exon number 23
gene id si:ch211-221n20.8
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24710527 ~ 24722098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACTGCTGTAGTGTACATGCCCCCCCCCGTACTGACACATAGCTGACTTGCGGCTGCACGAGTCCGCATCTGGAGAAGACAGGacaaacattttgacatttgGATAACTCGCTGTCTCCGTCTATCTTCTGGTATCAAATCCGTTCATAAGTGCATAGACAGTAGATCTAACCCGGATTCAGGTAATGACTCCCCTCAGGACTCTCCTGTCGGCCCTGCTGCTGGTGTTGTCTGTGTCTGAGCCTCTGACCAGCCCTGAGGAAAATGAAGTCCTGAAACACACAGAGGTGGAGCTCATCAAGAGTCAGGTGACTGAGAATGCCATTAGAAACCTCAGCGAGACGACACCGAGCCACACACCGACTACAGCTCCCTTGACTACCACAGTTTCCCCGAGCCCCAGTCTTGCTCCTCAGTGCATGGGAAACCAGGTGATGCTGGAGAGCAGCACAGGCTGCGGCTGTCCATCCGGCATGGTGAGGGATGGTGACAACTGTACCTGCCCTGAGGGCTTCACTCTGGAGGGGGCTGCAGGGTGTAAAGATGTTGATGAATGTGAAGGAGAGTGGCCAGCACCATGTGGTCTCCATGCCCGCTGCACTAATACCCCCGGCTCTTACTCGTGTAGCTGTCTCCGTGGTTACCTGATGGGTGCTGGAGGGTGCCAGGGTttgtcagcatATATAGACGAGTGTGCTCTGGCTGCAGTGACGGGCCTGCAGGCCTGTCAGGGTGATGCTGAATGCAAAAACACCCCTGGCTCCTTCATCTGCTCATGCCCTTCAGGATATGTAATGGCTCTTAATGGACAAAGCTGTGTAGATGTGGATGAGTGCAGCTTCGAGGAGCAGTGTCGCCGTGAGCTAGGAAACGTGTGTGTGAACACTCACGGCAGCTTCGTGTGCCAGTGCCAGCCAGGCTTCAGAGCAGAGGCCCTCGCCTGTATTGGTCCTGTGTGTCCGGACTACACCGTGTGTCAAGATGTGGATGAATGTACGGAGAGTCCTGCAGTGTGTGATGGTCACGGTGTGTGTGAGAACACGCTTGGGACCTACAAGTGTGTTTGTCGACCAGGTTACCGGGGAAACGGCACACACTGCGAAGATGAGAATGAATGTGCATCAGGTGGTCACGGGTGTGACACCAACGCTCGTTGTGGCAACATCATTGGCTCTTATTTCTGCCAGTGCTACCAGGGCTTCAATGGAGATGGACACTCTTGTTTTGACATTGATGAGTGTGCTCTAAACAACGGCCACTGTCAACACAACTGCTCCAACGAACCAGGAGGGTACAGCTGCCGTTGTGCCTCAGGCTACCAGCTGGACCAGGATGGACTCAACTGCACAGATGTGGATGAGTGTTTGGCACTTAATGGGACCTGCAAGCACATTTGCGTCAACACTCAGGGATCTTTCCAGTGCTCCTGCAGGCCCGGCTACCAGCTGCACATTGATGGCCACACCTGTGTGGacATTGATGAATGTAAACTCCAGAGTGGCGGCTGCTCTCACACCTGCACCAACACTCCAGGAGGACACACTTGCCACTGCCCTCCTCCTCTGCTGCTAGACACAGACAACCTCACCTGCAGCAATGTTACATCCTGCAAGCTGAGAAATGGTGGTTGCGACCATATCTGTAGCGTGAGGGCTGAGGGCCAGGTCCAGTGTACCTGTCGAGCAGGCTGGAAGTTGGACGAGGACCAGAGGAGCTGCGTGGATGTGAACGAGTGCGGGGACTTTACGAACGGAGGCTGTGAGCATCTCTGTGTGAACCATCCTGGTGGGTTTAACTGCGCCTGCAGGAAGGGGTATGAAGTGCGAACTGATGACCTAACCAAGTGCCAGCctgtgtgtaaccCTCGCTGTCAGAACTACGGAGTGTGTGTGGCCCCAAACAGCTGTGACTGCCCTCCAGGCTACCCTGGACTTGGATGCTCAGCCATGTGCTCCCCACCCTGTGCCCATGGAGGCAGCTGTATGCGCTGGAACAAGTGTCTGTGTCCTCCTGGCTGGACCGGAGCGGGCTGCCACACAGCGGTGTGTGAGCTGCCCTGTGCTAACGGTGGTCGCTGTGTGGGGCCTGATACCTGCCAGTGTCCCTCTGACTACACCGGCCCCCAGTGCCTCTTGCccTTGTGCACTCCTGCCTGCCAAAACGGAGGAAGATGTGCAGATGTCGACAAATGCATATGTGTTGGTGGATGGCAAGGAGCTCGTTGCCAGATAGAGCCTGTTCAGTGTCAGACACCTTGTAAGAACGGTGGAGTGTGTGTGGGCCTCAACAGGTGCCGCTGCGAAAAAGGATTTACCGGAAGTCTCTGTGAAACAGCGGTGACCACCCCCTGTGTGCCGCCCTGCCAACACGGGGCCACATGCAGTCCTCACAACACCTGTACCTGTCCTGAGGGCACTGCAGGCCTACGCTGTGAGAGACTGACGTGCCCTGTGGTCACCACGGTGGTCAGCATGGCTCGAGCCGTCCGAAAGGCGTTTAGGGAGAGTTACGTGGACCGCTGTGGACCCCTGGGAGTTCAGCTTTGCACTAAATACAGGATGAACCAGGCCCGTGTGTACCTGCAGGCATACAGGGTGGGCTACAAAATCCAGTGTCCAGAGAGGAAGGGCAGATGAGCAATGTTATATAAAAGCTCcttgtcattaaaaaaacattttgtgcaACACAGCAAGAACTAAAATGAGACAAGCTGTAAAATGAAATGTAACTGAATAGGTGCGAGGGCGTCTCTGAGGGCAGCCTCTATGTTGAAATATAAAGGGGAAATATATCATAAAGGCTGTTATTTGATCTGTGATGTATGTTGACAATTATCTTTAATCAGTTCTGTACACAGTCATATGTTTACATTTCATGAGAAATATTCCTCAGTATATAAAATGTACAATGGTTTCATTATTATGTTTGTATATGGCAGCTGAAAGTTATTAAACGTTCTctttttacaaaatggtgtcaATATTGTGAACTCGTCAATGATTGTCAAATAATAATGACTGTAATAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132146 lncRNA upstream 68442 24638466 ~ 24642085 (+) True G97938
TU132089 lncRNA upstream 197494 24511971 ~ 24513033 (+) True G97896
XR_005640189.1 lncRNA upstream 345352 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 454446 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 496668 24211860 ~ 24213859 (+) True G97789
TU132243 lncRNA downstream 26930 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 62698 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 65233 24787331 ~ 24787540 (+) True G98015
TU132266 lncRNA downstream 111339 24833437 ~ 24835517 (+) False G98019
TU132267 lncRNA downstream 111339 24833437 ~ 24835517 (+) False G98019
XM_039812158.1 mRNA upstream 1516 24692284 ~ 24709011 (+) True ghrhrl
XM_039812159.1 mRNA upstream 1516 24692284 ~ 24709011 (+) False ghrhrl
XM_039812155.1 mRNA upstream 26456 24668382 ~ 24684071 (+) True fyco1a
XM_039812166.1 mRNA downstream 6698 24728796 ~ 24733159 (+) False LOC120565988
XM_039812165.1 mRNA downstream 6703 24728801 ~ 24733159 (+) True LOC120565988
XM_039811563.1 mRNA downstream 26919 24749017 ~ 24753869 (+) False LOC120565649
XM_039810187.1 mRNA downstream 43349 24765447 ~ 24775660 (+) True LOC120564918
XM_039810188.1 mRNA downstream 130189 24852287 ~ 24873916 (+) True elovl1b
TU131697 other upstream 1232709 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1388618 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 2134325 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2135379 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2135603 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 59820 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 130203 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 145919 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 810727 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1008160 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile