RNA id: TU144510


Basic Information

Item Value
RNA id TU144510
length 337
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G107570
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23884593 ~ 23985057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGGtgaaatatctttattttattccatGTGATAGGCCTACACTTGTGTTTCATTATTTCTCCTTTTTATACATCAGATAGTAATAGAACATATCTCACACAAACGTTGCTAAACACAAGTAGACAGCATATTTTCAAATGGACAGACACAATTTAGAATAGCACAAAGCTGAGTATTTAGTCAGTGACAAGTAATAGAAGAGCTGCTCGTGTTAAAACATTGACATTTCAAACAAGCTACAGCAAATGACCAGTGTCTTTTGTTGTGCTATGGCTAGTTAGTTGGTGTGTGTTAcacagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640398.1 lncRNA upstream 20115 23855531 ~ 23864478 (+) False LOC120566416
TU144496 lncRNA upstream 84366 23798657 ~ 23800227 (+) True G107565
TU144458 lncRNA upstream 196521 23686594 ~ 23688072 (+) True G107531
TU144426 lncRNA upstream 240078 23643292 ~ 23644515 (+) True G107507
TU144310 lncRNA upstream 345211 23535861 ~ 23539382 (+) True G107410
XR_005640526.1 lncRNA downstream 46199 23946591 ~ 23976908 (+) True LOC120567136
TU144561 lncRNA downstream 156149 24056541 ~ 24059249 (+) True G107596
TU144696 lncRNA downstream 487092 24387484 ~ 24453868 (+) False arhgef6
TU144705 lncRNA downstream 512518 24412910 ~ 24413556 (+) True G107704
TU144713 lncRNA downstream 517199 24417591 ~ 24418293 (+) True G107708
XM_039813778.1 mRNA upstream 5917 23869142 ~ 23878676 (+) False pdzd11
XM_039813777.1 mRNA upstream 5917 23870858 ~ 23878676 (+) True pdzd11
XM_039813299.1 mRNA upstream 114405 23760077 ~ 23770188 (+) True tex11
XM_039813300.1 mRNA upstream 114405 23760077 ~ 23770188 (+) False tex11
XM_039813665.1 mRNA upstream 199897 23671255 ~ 23684696 (+) False lnx2b
XM_039813206.1 mRNA downstream 7278 23907670 ~ 23926666 (+) True inppl1b
XM_039813208.1 mRNA downstream 7278 23907670 ~ 23926666 (+) False inppl1b
XM_039814415.1 mRNA downstream 31254 23931646 ~ 23938563 (+) True p2ry4
XM_039813970.1 mRNA downstream 53352 23953744 ~ 23956783 (+) True sox3
XM_039812611.1 mRNA downstream 106015 24006407 ~ 24056276 (+) False atp11c
TU144527 other upstream 19319 23855525 ~ 23865274 (+) True LOC120566416
TU144403 other upstream 258304 23590328 ~ 23626289 (+) True G107487
TU144281 other upstream 389604 23492844 ~ 23494989 (+) True G107386
TU144289 other upstream 393235 23488301 ~ 23491358 (+) False LOC120566905
TU144826 other downstream 904808 24805200 ~ 24808701 (+) True G107789
TU144828 other downstream 941447 24841839 ~ 24843241 (+) False nox1
TU144869 other downstream 1172821 25073213 ~ 25097002 (+) False apln
TU144871 other downstream 1172821 25073213 ~ 25097002 (+) False apln
TU144872 other downstream 1172821 25073213 ~ 25097002 (+) True apln

Expression Profile