RNA id: TU144872


Basic Information

Item Value
RNA id TU144872
length 4915
RNA type TUCP
GC content 0.44
exon number 4
gene id apln
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 25073213 ~ 25097023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actcatacacacacacagagagaaacacacggCAACAGACAGACCTGCAAGCTGACTTCCAACACATTCACAGCTCCACTGAACTTGGCTCATGCTGCTTTTTTTCTgacagaagaaaagaagaaaaacacgcacatacacacgcacacacacacacacacacacctccgtgGGAGAGCTCAGATCAAGACGTGCCTTCAGTCTTGGAGTGGCGCTGTCACACACTGATATACAAATACGCATTTAGACAAATACACAGGCACAGTCAGGGAgccaccatacacacacatattcccACAAATTGACACACTCACTtctcacactcatacacacacacacacacacaggggagcaaacagtctctctctctttcttgctcGCTCAGctgctctctccccctctccctctctctctccctcccatccacacacacacacacacacacacacatacacacacacacacacacacacacacaccactacagTATATCAGCGAGTGACTAGCGGAGAGCCAGAGGGGAGTGCAGAAATGAATGTGAAGATCCTGACGCTGGTGATTGTGCTCTTGGTGTCTCTGCTGTGTTCTGCCAGTGCTGGTCCCATGGCCTCCACGGAGCATGGCAGAGAGCTGGAAGAGGCGGCTACAGCGAGAAAAATGGTCCAGCAAAACCCTGGGAGGGGCGGTCAGAGCCACAGACCAGCCGGCTGGAAGAGGAGACGCCCACGGCCACGTCTTTCCCACAAGGGACCCATGCCGTTCTAGAGCGAGGCACTGCTTTGAGCGCCCTCCCCCAGGTTCTGATTTCTATGCTCTTCCTTTGCCTTGGGGGGCCTTGCAACGAAGGGCCTACGCTTGCCCAGCCTGAAGAGTGATGTCCATAGCACCTGCTGGTTCTTCAAGCAACTCTGTCCACAAAAATCAGGACAAGCCGCTCACCCTCAGCTCTAGGAGGAATTGGGGGCAgggaaggggggtggggggtatgGAGCCAGAGCTATCAGACtctatttctctgtctctctctttctattacTCTCACTCCCTCACttcttctctctatctctgtcttctcccaagtgttttttcttttctttttcaattttcCTATTATTTGCTTAATAGAGCCCAATCACAGCGATCTCCCTGAGTGTCTCACACAGTTTGCATGACATGTGGTGGAGAGGGAGCCCGGTCAAAACAATCTGAGTCTTAAAGCATCTGTCACTTCACCACGGTGTGGTATTCCCATCTCTCAGATCCAAGGTTACTGCAGCCGCTGATTTCATTGCCGTGTAGCTACTTAACGGCTTTACTAGCGGGAGAGGGCGCTAATAATGTGGAAGGGCAGGGTCAGTTTTGATAGTTGACAATATTAAGTTCACTAATGATACTCTGGATGTCTGGTGCGAAGAAGAATTCAAGGTGTTTAAAATGGAAGAGCAAGACATTTGAATGGCATTATATCCATCGCTTAATTATCATTATTAATGGTGCTTTGTTCCTTCTAATGACAGTACGTCCACATGCAAAGTTAAGTTGGACTGAAAAGAAAGCACATATTGTCGAAACAATCTATTTAAGTGACAGAATAATTCCTTAATTTAGAAGATTCTTTAATCCAAAGCTGTTTCTGAACTCATTAACACCTTGGGGTTTACTGACGCGCTCAAGGTTACTGTAACATGTCCCACCTTGGACGAGTCCTTTGACCCCAAATCCCAATCCCAATCCTGTCCCCAATCCCCAGCCTTCTCACCATACTGCTGCCCTGTGCAGCTGCTCTACTACACGACTGTTAACTGGCAGGGGCAGTCTGCTCCACCGACAGGCTGCCTTGCCTTTTAATGAAGTGCCAAATAATAACCTTCTCCACAATGCTGCCAGGAACAAAGGAATAAAAGGTTAGGGAGAAACACATTACCTCTTGTTTGAAGTCTTGATACACTGACACATTATGCATTTTCAATTTCTGCAAACAGAAATCCCACACGAGACAATGTTAGCGAGGACCGTTAAAATagaccaaaaaaagaaagaaagaagaaacaaagCAAATATCAGCTCAGTTAATATGTCACCATAATCAGCCTACCACTAGTGCTCTGGCTGTTTTAATATTCAGCATAAGGCTGGTTTGACCCTTTGACCGAAATCATTCACTAACGAAATGCTATGCCTTTCCATCATACTGGAATATATTACTGTTTATGTTTATTTCTGTGTTAAggtagttttatttcttttttctcaggGTGCTGTGATAGAGGCTTGTACTAGAGCAGTCTATTTTGTGCATTTATTTAActcaacacaaacatacagtacatttaaagCTACTATGAGCATATTTTCGTATATTTCCTTACTCTTCCTCTATGTATTCACCAATATAGCCATGTATCCAGATTCAGTCCTTTCTAGTCATGATCCTTTCCCTACATTATGTTGGGTACAGTTGCCTTTCTAGTATGCCCTACCACAGCACAGGTGGTCGTGGCTTTGATCATTACGCTCATTAAATCCTGGAGTTAATCTTTCTCAGATGAATCTCCCCAAGGCTGGCCGGGGCCACTTAGTCTGAGCTCATTGTTAAATTGGCTTAGACTGAAACCACACCCTTCCCCCTTTTCCAATCCTCGAGCCCCTGCTGATTCAATGTGTAACCATGTAATCTATTAGGACTGTAACCTGTAGAGCAGCCACCTTGCAGTCGTTCGTTGTGTATTAGGTGTGTGGAGCAACTTCCTTGTTTTTTTCACTTGTATTTTAGGTGAAAATCTGATTTAAATCCACTGTGATTCAATCAGAAAACTCATATTTCAAGTCAGTTTTGACCACACAGGCAACTGGCAGGTTAACCTAGATATCCAACACCCTTTCCCTCTCGCCATGTCTCATGcaaatattataataaaaagCAGTCTTCTCAGTCCCAGCATGAGAAGCTTTTATTAAGAGAGCATCTAAAATCACAGTGGTAATCCACCCAGCCAAGATCACCttgattaaaaatgtattaaatccTAGGGCACTGTGAAGAGTAATAATAATTTCAGTTCCACCATTATTTTTTCATACCCTCTCAGACAGAGATGTAGATTTCATTAATGCTCGGGAGTGAGACAGCTTTGCTCAGGATGTCTCATGTATTATTGGGGAAGATAGTAGGAAGATATGAGCTGGGGATGGAAGTTCAAAGCAGCTGGAGTTTGGAtgctggaagtagactgggtcATGACAAGGGGTTCAAATCAATATTTCCCCATCTCAGAAGTTATTGTTACGGAGCCGAGCAACGTCTGTATCCGCACTGTTCTTCATGAATGTATCCTCACCATCTGCACCAGCCATGCTGCCCTTTCAGAGACCAGAGCAAACCAATGTGTATGTAAAGTACTCTTTTTAATCTTGGTCTGGTTATCAGTTGAATCCAAAaaatcaaaagccaaatatCCCACTGATCCAAAGCCTCCGGTGTCAACTAGTCCCAACAAAATAGACGCGGCTTTGCTCCAAGACTTCTCTGTATGGGTTCGCAAGGCTGCACTTTTGCAATTCCATTATGCTGCTGGAATAATACACCCTGAAAACAAGAGTCTCCTGGTATGGAATGGTTTTCCAGTGTattgtgacaatttttttgtctGATTCTTGTCTAGCTGGTTGTCCAAAGCTTACTTTTTGAGTACAGTGTAAAAAGCTGTATATTTTGTGGATGTAACAAAATAGAAAAGTAGTCTGCAGCACAATATGTCATGGACACGTGAAAGCTTTCAGGCATTCTTTTCTTGTAGATCATACCCCACAGCCCCCCCCCTGCACATCAGGTTAATGGGCCTTGTGGTGTGGAAGGACAAGCACGTCCAGGCTCAAACTGAAATGGTAAACCAATACATTATGCTCGGGGAGCAAAACCATTTTCCTTAATGGTCTTTTCCAGCAAGGCTTACACAAGAGAAACGATTCCTATCCTCTCAATGTTTCCTCTCCAGTTCCTCTTCTCTGTGACCATCACAAGGCCTGAGTAATGTTCCTATGCACTTGTTAGCATGTTTTCCTGATAGAAAAATGTTTGTTCTGAGAACTTGCCCCTTTGTGTTTAGTTCTTATTGTCCAAATGCATTTGGCTGGGAGTGTTTAAGGAGTGGCGATGAGCAGAGAGATAGATTTGTGTTACAGGTGGAGACGAGAATAAGCTAGCAACAGGTTTTAAAATATTAGCTTAGCTGTTGATCTCTGTTTCCGAATATAGACCCAACCCCACGCAAAATCTTCTCAGAAGAacacaaggttttttttttatcctattGTCATTCTATACTCAGTTATCTGCCAGATAAAAACCCTCTAAAATGACATTGAACTCAAAAACATTTCACTTATTGTGGAACACATTCCATGGTTTTACCTTGTGAATCTCTAAGCCCATCAAACTGTATCATGTTGGCCTTCAAAGTGGGTGTGTGCAAGATCAAGTGGCTGATATTCAATCCAATGCATTCACACATTTCCATCGGCTGGGCAATCCAAAGGATAACTAGATTTTATCTCCCAGGGGAAATGACTAAGATCTGTCATTATCTTGGAGCCTCAAAATGAGACTTCCTACGCCCAGAATAGCACATGCCCCTCCTGCCTTGATTGCGACACATTCTCCATCTATGTAACCACTGTGTTTAAGATCAGctcattcagaatcattcagaacaATCGAAGGAGAGATGCAGTCTGTAGGCTTACACGCCATTGCAACAGTGTTACTAGGTCTCGAGCAGATACCATTTAAAAGACAATGTATTATTCCTGAAACTTATATTCTGTTTATGGTGTGTGCTCATATTACTCACCAGGCCAAATGTACAGTCCCTGTCTCTGTTTTGATGTTGAACTGGgcaaaaataaatgacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144867 lncRNA upstream 125877 24947121 ~ 24947336 (+) True G107821
TU144866 lncRNA upstream 126271 24946738 ~ 24946942 (+) True G107820
TU144865 lncRNA upstream 127509 24945327 ~ 24945704 (+) True G107819
TU144864 lncRNA upstream 128673 24943550 ~ 24944540 (+) True G107818
TU144860 lncRNA upstream 139518 24929739 ~ 24933695 (+) True G107814
XR_005640455.1 lncRNA downstream 9438 25106440 ~ 25107622 (+) True LOC120566737
TU145067 lncRNA downstream 155123 25252125 ~ 25252468 (+) True G107958
TU145085 lncRNA downstream 174537 25271539 ~ 25273631 (+) True G107972
TU145084 lncRNA downstream 182608 25279610 ~ 25282207 (+) False rpl39
TU145103 lncRNA downstream 191117 25288119 ~ 25290199 (+) True G107981
XM_039813959.1 mRNA upstream 92413 24953134 ~ 24980800 (+) True zdhhc9
XM_039813958.1 mRNA upstream 95932 24948008 ~ 24977281 (+) False zdhhc9
XM_039813957.1 mRNA upstream 95932 24952461 ~ 24977281 (+) False zdhhc9
XM_039813948.1 mRNA upstream 145245 24920313 ~ 24927968 (+) True srpx2
XM_039814042.1 mRNA downstream 83986 25180988 ~ 25186479 (+) True clic2
XM_039813247.1 mRNA downstream 97741 25194743 ~ 25197196 (+) True c1galt1c1
XM_039813250.1 mRNA downstream 105148 25202150 ~ 25214547 (+) True cul4b
XM_039813227.1 mRNA downstream 118118 25215120 ~ 25231503 (+) False lamp2
XM_039813226.1 mRNA downstream 118118 25215120 ~ 25230326 (+) False lamp2
TU144828 other upstream 229972 24841839 ~ 24843241 (+) False nox1
TU144826 other upstream 264512 24805200 ~ 24808701 (+) True G107789
TU144527 other upstream 1207939 23855525 ~ 23865274 (+) True LOC120566416
TU144403 other upstream 1446924 23590328 ~ 23626289 (+) True G107487
TU144281 other upstream 1578224 23492844 ~ 23494989 (+) True G107386
XR_005640591.1 other downstream 183946 25280948 ~ 25281080 (+) True LOC120567498
XR_005640445.1 other downstream 194605 25291607 ~ 25307926 (+) False sept6
unassigned_transcript_476 other downstream 224223 25321225 ~ 25321296 (+) True trnae-uuc_61
TU145245 other downstream 1364318 26461320 ~ 26467814 (+) False btk
TU145248 other downstream 1379820 26476822 ~ 26479149 (+) False timm8a

Expression Profile