RNA id: TU157733


Basic Information

Item Value
RNA id TU157733
length 2131
RNA type TUCP
GC content 0.45
exon number 7
gene id LOC120567968
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22608049 ~ 22620131 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCTTCCATATTCCACACAGTCAGGCGTTTTATGGTTTTCCTACTCTGCGACATAATGATTATATCCATAACGCCAAAATGAGCAAGCTATTAATGGACCATGGTtcccttcctctttcctctctccgtCTTATCGTGCCCCCTTTGCAGCTTGTGTCTGCAGCTCTGTGGGAGATAGTGAAGCAGGGAGCTGTGATGTACTATGGTCTGCTGGAGGAGTTCGTTACCTCCGTGCTGGAAACAGTCCCTGAACTGctcacatacacagagagagtcCAACTATCTATGGGCCTACGTGCAAAGGTGGTGCTGGAGTTGTGCAGCAACAGTGATTTTGCCAGCCCACAGGCCATCCAGCCTCATCTGAGCAGAATAAACACCTACATTACAAACCAGGATAAAGAGACTTCCAGCTCTGAGGTAAAAGCATCAGTGACAAACTTCCTGAAGCTTGTTCAAACTCTAGTGGATGATCAACGTCAGAGAGATACATTTTATCAGAAAATCTTTCCAACAGTGTTCGGCCCTAGCTATGACTCAGCCCTACTGGCTCTAATGAGAaagttcctcttcaatctgcaGAAGCTTTTACCTGTTCCAAACCTTGAACAAAGTGTGTAGACTTCCTGAATCAACCTGAGCCCCTGAATACACTCATTCAGCATCACAAACATCATGGCCACAAAGTTCCACAAGCTTTATCTTCCTCCGGTGATGATTGCATTCTTTCCAGCCTGTCCTATCACCTACCACACGTGGACAGTGACAAAGGAGACACACTTGGCAGTGAGtcgaaaaagaagaaagaagaaaactcCAAGGTGAAAAAATCAGAATTGTTGCGGAATAGCGATAGAAATGGACAGAAGCATGTTATTGATCTGACTGAAGACCAAGGAGCTTCTGTTGAAGTAATACTTCAACCTTTTGATGAAAGTGAGTCTAATGATGATGAGGACGTGGACAAAGAATGGTCCCACCATTTGAAAACTGGCAGTACGACCTCCTCAAAAACCTTCAAGTGTCTTGTCTGTGGCAAAGATTTTGGTTCCCCAAGGAAACTAAAGGAACACAAGATTAGCCACAGTGGTTGCTGTACAAACCCAACGAGGCAGTCAAATTCTGTGGGCCAAAGTAGcttttttgagaaaataaatTTACATCCTAAACCAAAGACATTTGAGAATAATGCTTCTAGAAGTGAGAATAGGCTTTCACCATGTGCAAGTGCCACAACATATAACCCATCAAATCTACACAGTCTTCAGAATTTTGAGCGGTCTAATGATGCTTCTAGTCTTGTTTGCCATGTTTGTGGCAAGGCTTTCACTTACCCAAAGAATTTTGACAAACACCAGAGGACTTGTGTGGTTAGTAGTAAACGACAAGCCGAGACAGACCCACAGTGTTCCACAAGCTTAGCTCATCACTCCAAACCAAATCCTGTTGATAAGACCAAAGACTCTTTCTCCACTGAAATTGGGCTTTCAAATGGTCTACCCCAGGAATCAATATCTTTGGACTCCCCACAACAGCAGATGTGTAAAAGAAGCAGTCGTGTCAAACAATGCTCCGCATGCGGGAAGGTATTTACTTGTTCTGTCGACTTGATGAAGCACATGAGATGTCACACTGAACACGGTCCTTACCTTTGTTCCTGTTGTGAGAAACACTTTGACAACTATGAAGACTGCGAGACGCACCAGGAAGGTAAATGCAGCGTTTCACACCAGCATTCGCAAGACAATTCATCGAGCAACGCGAATAAAAGGAATCGGGAGAATGCCGTTGTTTCAAGCGGTATAACTCCGATCCCAACAACCCGAGACGCATCTGCCAACTCGCAGGCTAAGTCACCTCTGACGTGTCAAGAATGTGGCCAGGCTTTTACTTACTACAAGAGTTTTGAGAAGCACCAGAGCAGATGTTCCAAAAGAGCTCCTCGAAGGAAAGAGCCAACAAATGCAAACCATTGCGTTATCAATGCTTGTAATTTCCGATCAGCCGACAATTCCAATGGGAGACATGCTGAGGCAAGTCCTGAAACGAAGGAAAGTGAAACTGCAAAAACTCTGACCTCGGCAGAACACGCAGATGACTCCCGGACTGAGTCTCGCGCCATCAAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157668 lncRNA upstream 135224 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 293117 22307767 ~ 22314947 (+) True LOC120568744
XR_005640796.1 lncRNA upstream 369559 22235912 ~ 22238505 (+) False LOC120568856
TU157612 lncRNA upstream 371465 22234819 ~ 22236599 (+) True LOC120568856
XR_005640669.1 lncRNA upstream 571114 22025113 ~ 22036950 (+) False LOC120568180
TU157787 lncRNA downstream 134711 22747120 ~ 22747732 (+) True G117077
TU157795 lncRNA downstream 139843 22752252 ~ 22754490 (+) True G117082
TU157860 lncRNA downstream 305467 22917876 ~ 22918106 (+) True G117128
TU157944 lncRNA downstream 761301 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 764724 23377133 ~ 23378516 (+) True G117190
XM_039814975.1 mRNA upstream 83949 22516278 ~ 22524115 (+) True mep1bb
XM_039814973.1 mRNA upstream 112739 22487837 ~ 22495325 (+) True ripk1l
XM_039816503.1 mRNA upstream 339505 22257208 ~ 22268559 (+) True LOC120568797
XM_039816575.1 mRNA upstream 381938 22220708 ~ 22226126 (+) True LOC120568851
XM_039816573.1 mRNA upstream 397326 22204495 ~ 22210738 (+) True gpaa1
XM_039815112.1 mRNA downstream 11120 22623529 ~ 22632195 (+) True LOC120567970
XM_039815727.1 mRNA downstream 29101 22641510 ~ 22681293 (+) True LOC120568311
XM_039815728.1 mRNA downstream 29101 22641510 ~ 22681293 (+) False LOC120568311
XM_039815729.1 mRNA downstream 29101 22641510 ~ 22681293 (+) False LOC120568311
XM_039816921.1 mRNA downstream 74685 22687094 ~ 22688773 (+) True LOC120569076
XR_005640709.1 other upstream 710673 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1692776 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2232431 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 3091119 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 3589338 19017058 ~ 19018726 (+) False LOC120568770
XR_005640697.1 other downstream 29101 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1064670 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1238470 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1255845 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 1293461 23905870 ~ 23908401 (+) True G117353

Expression Profile