RNA id: TU157998


Basic Information

Item Value
RNA id TU157998
length 1666
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G117228
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23493106 ~ 23566317 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCACAAACACACTGGCAGGATGATGTAATATCATACAAGAGAAGAAAAATATCCAAGAAACAATTTTGTTACAACCATTCATTgagaaaatatatacaattgAGTCTTcggaaagttaaaaaaatacatgcCATATACATTACAAGTTCTAAGACTGTCTCCAAAATTTTACAGTCGACTTGATATTGTGCACGCAAAAACTCTTCTGTTTCTAAGCATGTGACTTGTGAAGTGTCAGTATAAGAAATATTTCTGATTAAGGAGAATGCCATTTCTGTCCAAGGTAGATCAACCCACGGTTCCAAACAAGAGGTCCCCATTACGATTCTGTCTGTCACACACTGGTTCGTCTTCCTCACAATATCATTAGACGTTTGCACCTTATTTTAAAAgcaatgtaaaaacaaacaggTAAATACATGTCGGTGTTCCTTTTCgtgttaaaaagttaaaaagtcaTTTTTGGGTTTCAAAACCTAAttcacagtttttttaaatcaaacctGATTAACAGCAAACAGATCACACTGATCTTGTACTACTTAAAGagtcttttttctcttttgattCTGTAACTGATAACTTGTTACGTTAGTcaacaaaaatatttctttttttgagtGGTCAAAGCATGTGTAAGTCACAAAACACTACGCTACAATACCTTACttttaatacaacaaaaatactttgtGAATTATTGTGGTTATATTACAAATTCTGTACAGAATAATCATAATATATACTCTCAAACTGAAATAACGTCCATCTTAAATAAATTTCAAtgacaaacagaacaaaaacaatttaaaaacacccAAACATCAAGAAGGTTAAGGTAGTATTTGGTCGGTTATTCCTATAGTTTTCTTTATGTACATTTATACAAAAGTAACAGCATGTCTTCCTCAAtcttcaaaaacaaaagcaaactaGCCTTCTTCAAATCAATCTCATCATTTTAAGAATAAAATTCATTCACTCAGTAATAAATACAAAACCTCTCGAATTCCACACAAATCACATGACAGAGACCTATGATAAAACTGACTCATGGAATCAAGTATTTTAAAagttttcgtgtgtgtgtgtttttttgtttattttcttttttttagtgcaAGTTAATATTCCCTTCGCGGTATTCATTGCTGTACATTCCTCATTCAGTGATGTCTACATTTAGTCATACGGTATACATTAACAGTATGAAACAAAAGGGCCTGCCCTTAGTAAGCAATAAGGCCGCACCCTGCACAGTGCTTTCTCATTCGCTGGTGGATTCCGCACCCCATGTACACCAAACAAACGCACagatacatacagacagaggTATCTCATACAACAGAGCCCCTCACATATGGCACAAGTCACATCCTGCTACTATGTTACATTTCCCTTCCTCCACCCATTTCTTTCCACGATCTTGATGAACCAAAAAGTAAATTCATTCATCCCCGCAAGGGTTCAGGCCTTCTGCTCATTCATGAAATGACTTTAATGCGaaacctttttttccctctgtgcAGAGATCACAGCATCCACACACTATAGCAAGGAATGCATTTAGGTTGGTTGTTTTCTTCAGTTAATCCACTTCCTGCATTTAGGAGCTCCACAGTGGCAAGCAATCTTGTGCTGACCCTCCACAGTgccaagcaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157990 lncRNA upstream 19422 23472547 ~ 23473684 (+) True G117221
TU157984 lncRNA upstream 30806 23446351 ~ 23462300 (+) True G117219
TU157982 lncRNA upstream 52271 23439571 ~ 23440835 (+) False kdsr
TU157950 lncRNA upstream 114590 23377133 ~ 23378516 (+) True G117190
TU157944 lncRNA upstream 118907 23373710 ~ 23374199 (+) True G117187
TU158087 lncRNA downstream 176167 23742484 ~ 23745977 (+) True G117297
TU158126 lncRNA downstream 282370 23848687 ~ 23848946 (+) True G117315
TU158131 lncRNA downstream 289812 23856129 ~ 23856531 (+) True G117320
TU158159 lncRNA downstream 330926 23897243 ~ 23897646 (+) True G117344
TU158161 lncRNA downstream 332333 23898650 ~ 23898912 (+) True G117346
XM_039815258.1 mRNA upstream 25295 23441591 ~ 23467811 (+) True bcl2b
XM_039815252.1 mRNA upstream 52263 23433625 ~ 23440843 (+) True kdsr
XM_039816495.1 mRNA upstream 59732 23422716 ~ 23433374 (+) True vps4b
XM_039816496.1 mRNA upstream 59732 23425370 ~ 23433374 (+) False vps4b
XM_039817029.1 mRNA upstream 149211 23325303 ~ 23343895 (+) False LOC120569134
XM_039815089.1 mRNA downstream 26415 23592732 ~ 23681748 (+) False LOC120567964
XM_039815088.1 mRNA downstream 26714 23593031 ~ 23681748 (+) False LOC120567964
XM_039815092.1 mRNA downstream 26823 23593140 ~ 23681748 (+) False LOC120567964
XM_039815090.1 mRNA downstream 37082 23603399 ~ 23681748 (+) False LOC120567964
XM_039815091.1 mRNA downstream 44417 23610734 ~ 23681748 (+) False LOC120567964
XR_005640697.1 other upstream 814375 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 880697 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1595715 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2577818 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 3117473 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 110762 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 284562 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 301937 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 339553 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 346347 23912664 ~ 23914498 (+) True hes6

Expression Profile