RNA id: TU158087


Basic Information

Item Value
RNA id TU158087
length 344
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G117297
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23742484 ~ 23745977 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCACTGTATCCTCCGGTCTGGCTGATAACATGGCGAAGGGTATCCACCTGCTGAATTGGGAGTTGATGGGGAGTTTGCCTGGCTGCCGTGAGCAGACACACTGGTTGCACTGACTGCGGTCCGTGCTGCGTACATGTTGGCCTCTTCTTGGAACTTGCCGATGTTTTTCTTGTATCGGATTCTCTTGTTCCCAAACCAGTTTGATACCTGTGAGACTGTGATGCTGCATTTCTTGGCCAGCTCTTCTTTGGCCTCCTCGCTGGGATAGGGGTTACTGAGGTGGGAGTAAAAGTACTCGTTTAGGATCTCTGTCGCCTGTTTGTTGAAGTTCCTCCTCTTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157998 lncRNA upstream 176167 23493106 ~ 23566317 (+) True G117228
TU157988 lncRNA upstream 222715 23468620 ~ 23519769 (+) False G117220
TU157987 lncRNA upstream 228399 23468620 ~ 23514085 (+) True G117220
TU157990 lncRNA upstream 268800 23472547 ~ 23473684 (+) True G117221
TU157984 lncRNA upstream 280184 23446351 ~ 23462300 (+) True G117219
TU158126 lncRNA downstream 102710 23848687 ~ 23848946 (+) True G117315
TU158131 lncRNA downstream 110152 23856129 ~ 23856531 (+) True G117320
TU158159 lncRNA downstream 151266 23897243 ~ 23897646 (+) True G117344
TU158161 lncRNA downstream 152673 23898650 ~ 23898912 (+) True G117346
TU158170 lncRNA downstream 164545 23910522 ~ 23915931 (+) True G117355
XM_039815089.1 mRNA upstream 60736 23592732 ~ 23681748 (+) False LOC120567964
XM_039815088.1 mRNA upstream 60736 23593031 ~ 23681748 (+) False LOC120567964
XM_039815092.1 mRNA upstream 60736 23593140 ~ 23681748 (+) False LOC120567964
XM_039815090.1 mRNA upstream 60736 23603399 ~ 23681748 (+) False LOC120567964
XM_039815091.1 mRNA upstream 60736 23610734 ~ 23681748 (+) False LOC120567964
XM_039815907.1 mRNA downstream 70063 23816040 ~ 23820441 (+) True glula
XM_039815576.1 mRNA downstream 124074 23870051 ~ 23890968 (+) True gigyf2
XM_039815573.1 mRNA downstream 125229 23871206 ~ 23890968 (+) False gigyf2
XM_039815574.1 mRNA downstream 125229 23871206 ~ 23890968 (+) False gigyf2
XM_039815575.1 mRNA downstream 125229 23871206 ~ 23890968 (+) False gigyf2
TU158062 other upstream 56680 23677079 ~ 23685804 (+) True LOC120567964
XR_005640697.1 other upstream 1063753 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 1130075 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1845093 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2827196 20882706 ~ 20915288 (+) False LOC120568904
TU158130 other downstream 104902 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 122277 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 159893 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 166687 23912664 ~ 23914498 (+) True hes6
TU158239 other downstream 276464 24022441 ~ 24023659 (+) True G117400

Expression Profile