RNA id: TU162641


Basic Information

Item Value
RNA id TU162641
length 1432
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G120842
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37089450 ~ 37090881 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagattcattaagaagttccccatactttaagagttacacagcactggccaggagtcatacttgacgcctcctagcctatctcaaacatctctctcagataaggccagggatgattgggaatgtcttgctgcttgtctgcctaatctctgggatctctgttttcttcattttcaaatcatgtcgccgtccatactactagtgctaacgttaccgccatcaagctgcaattatttgccgcaaatgaatgcagaatgcggccgaatctgtcgagtcgtcttgtagtggtgcgttacatgcaacgtagcctacagtatattcccatccaattagattgaatttggtattgatcacgtgaaaaataataacggtaactccagtgaaattatttgaaacttgctagtgaggactagattaggaccgtatttaaagctgatgctggtttccaacttcgccccaccccccccaggtgtgtctgtaaaacacggacagagacaacttctctcttttgatgctttacaagcaacgtgaaacctagctaacaggtgaagaacacaaacaactaaatcactagctaacctactttaactgtgcaggaactatagaccaatacaacaacaggcttaaatgaactgacaacataagttatacgacttacagttctcaaggacgcacacacaccatctcaaatgattatcctccggacagcagtctctctttctattctccgacattacgacctcttgtacaaaactaaagtaacgagccaattttttaaatgtaaggagtagaaagtaccgatattcgtgttaaaatgtaaggagtaaaagtaaaaagtcgccacaaaaataaatagtaaagtaaagtagaaatatccgaaaaatctacttaagtacagtaacgaagtatttgtacttcgttacttcccatctctgttcatggcatagcagggcactgcagggtgtcacaggacatagcagggtatagcagggcgtcacaggacgtagcagagcactgcagggcgtagcaggacgtagcaaaCAGCAGTAgtaaacacagcagacaacagacaaaatgcaaaaaaaactaaaaaagaagTGAACAGAAAATCAGTAGACAATAATCGAtgatggtctgtcactgcatcgatgcagaatcgcCCAGGTCCGCATCACAATGCATCCATGCAATGATTCATTTTAACACCCCTACGGCAAAGTATTCTTTTTTCTTGGAGTGGTTTATACTCCGACGGAGAGGGAATCAAACTGGAGGGTCCTCCAGTCGAGACTCTCAGGGTTTCCGTTCCCTCAGGGCTACAACTGGTCAGCTGCGCAAACTTGTGGGTTACAGTTGATCAAAGTTGGAttcaatgtaaaatgttctcaCTGATTTACTTCCACTACACCTGGCGATGCTGATGAGTCCACgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162630 lncRNA upstream 118012 36959931 ~ 36971438 (+) False LOC120568208
XR_005640684.1 lncRNA upstream 214056 36871351 ~ 36875394 (+) True LOC120568213
XR_005640683.1 lncRNA upstream 223310 36863799 ~ 36866140 (+) True LOC120568212
TU162604 lncRNA upstream 223921 36863793 ~ 36865529 (+) False LOC120568212
TU162586 lncRNA upstream 269676 36819563 ~ 36819774 (+) True G120796
TU162660 lncRNA downstream 45478 37136359 ~ 37136750 (+) True G120860
TU162670 lncRNA downstream 73967 37164848 ~ 37214610 (+) True G120868
TU162676 lncRNA downstream 109074 37199955 ~ 37200583 (+) True G120872
TU162681 lncRNA downstream 155357 37246238 ~ 37247868 (+) True G120875
TU162725 lncRNA downstream 204027 37294908 ~ 37297045 (+) True G120910
XM_039815567.1 mRNA upstream 2007 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 233607 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 244800 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 341782 36737148 ~ 36747668 (+) True LOC120568506
XM_039816063.1 mRNA upstream 378638 36624332 ~ 36710812 (+) False LOC120568504
XM_039815045.1 mRNA downstream 118424 37209305 ~ 37230711 (+) True LOC120567940
XM_039814685.1 mRNA downstream 506933 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 898684 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 920885 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 948200 38039081 ~ 38098246 (+) True LOC120569077
TU162632 other upstream 70660 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 682761 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 683677 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 839923 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 846846 36242522 ~ 36242604 (+) True trnal-uaa_9
TU162730 other downstream 212013 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 920996 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 1106160 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1664803 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2301091 39391972 ~ 39392776 (+) True G121171

Expression Profile