RNA id: XM_039815574.1


Basic Information

Item Value
RNA id XM_039815574.1
length 4801
RNA type mRNA
GC content 0.51
exon number 29
gene id gigyf2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23870051 ~ 23890968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGGTGGACTCAACGTTAAGAACTTCAAGAAGAATGGCCGAAACCCAGACACTTAACTTTGGACCTGAATGGCTCCGTGCCTTGTCtggaggtggtggtggcagtggtggtggtggaggcgGTGGCTGCGGGGTTGCCTCTCCACCCCTCTCACCTGCATTGCCAAAGTATAAACTTGCAGACTATCGCTACGGGAGAGAAGAAATGTTAGCACTTTATGTAAAGGATAACAAGATCCCTATAGACCTACATGATAAGGAGTTCTTGCCGATATTGCAAGAGGAGCCTTTGCCGCCTCTGGCACTTGTGTCTTTTACAGAGGAGGAACAGAGAAATTTTTCCATGTCTGTAAACAGTGCAGCTGTACTTCGGCTGACAGGGCGAGGAGGTGGTCCGATAGTAGGGGCACCAAGAGGCCGAAGTACCTCAAGGGGTAGAGGCCGGGGAAGAGGAGATGGAGGGTTTTACCAAAGAAGTTTTGATGATGTGGAAGGTTTTGGTcgtggagggagggagatgcATCGCTCCCAAAGCTGGGAAGAAAGGGGAGAAAGACGGTTTGAAAAGCCAGGTCGAAAAGACCCAGCTGAAGTTGCTCCAGGACATTTTCCAATGAATCACATCCGAGGAAACTATGAGGATGGTGTAACAGGCCCGCCGAGGAAGCACGACTTCACGCGGTCAGAGAGTGAGAACTGGCGTACTTCTCAGAATGGTGAGGATGATGAGGGGGGCTGGCGCCTGGCAGGGTCTCGGCGGGACAGTGACCGGTGGTGCCCCACGAGCCCAGCAGGGTGGCACCCAGATCAGCGTCGGCGTTTTCCATTTGATGCAAGAGAAGACGAGCGTGGCTACAGGAGGCCACGTTCAGGCAGCGGCAGCCTGGAGGACGAGAGGGACAGCTTGCCAGAGTGGTGCCTGGAGGACGCAGATGAGGAGGCGGGCACCTTCGACTCGTCGGGGGCCTTTCTTTCACTCAAGAAAGCCTCCAAGGAGCCAATCCTGGAGGAGGCAGAGCTCGACTTCAAACCCTTGGAAGAGTGTGAAGAGGGCCTGGAGGAGGATGACTGTCAGCCCAGGGAGACCAAAGAAATGGAAACGGAGGCCAAGAGAGAGGCCGAACGAAAAGagttGTCGAGAGCATCAGAGGCTTTACCTGTGAATCCAACTCTTGCTCCCCCAGTCTTAGAGCCCCAGGTTCCTGCCCAGTCTCTGTCCCTGAGCCAGCCCAACAGAACAGAAGAGTCTGAAAGGCCATCTGAACGGCATCCACCCCTGGATCTCCAACCAGCGCCCTGTAAAGTCCCCCTGCACGTCCCCATGTCTAACAGTATGCTTGAGTCCCTACCCATGAACCACATTTCTACAACCCTTGCAGAATTATCTGCTCCATCGCCCAGCATCCAGCTACCGCAAAAGCCCATGGAGGTTCCTGTGGCGATGAATAATCCTTTGCCCTTCCCTTCAAGTATAATTGAACCTATTGGCAGGCCCACCACTGTGCCACACGACACAGATGAAGATGAGGGACTGAAACACTTTGAGCAGGAGGCAGAAAAAATGGTAGCATACCTACAGGATAGTGTGGTGGATGACGACAGGCTTACAGCAAAGACTTCAGAGAAGCCCAAACCTGCAGGCCTGCCGCTCACCCACGAGGCTGCTCTCAAGTGGTTCTACAAAGACCCCCAAGGGGAGATACAGGGTCCATTCAATAACCAGGAGATGGCTGAGTGGTTCCAGGCTGGTTACTTCACAATGTCTCTTCTAGTCAAAAGAGGGTGTGATGAAGTATTTCAAGCACTTGGAGAGATCATGAAGATATGGGGAAGAGTACCGTTTACTCCAGGCCCTGCACCACCACCTCTTCAGGGGGATGGTGATCAAGAGAGGTTGAAGAGGCAGCAAGAGCTCACTGCTCTCAACCTTTACCAGTTACAGCAGCTCCAATATCAATACCTCCTCAGGCAGCAGTATGCTCAGGCCCTGGCCCAGCAGAAAGCTGCAGCTCTTAGCTCAGCTCCTcttcaacagcagcaacaacaccaACAGCAGATCAACCTGCTTCTACAGCAATACCAGGCTCTCAAGCTAAGAGCGTCTGAGAGCCTCCTACCTCCTGTTACCCGGTCCCTGTCTGTACCAGACTCTGGTTCTGTGTGGGAAATGCAGAACCCGTCCTCTCAGGCTTCCTGCACACCAAATGTCCAACAAGCTGCTTCAAACACATGGGATGGCAGCAGCGTATGGGATTTACCTATAGACTCCATAGCACAGGCTCCAACCATTGAGCAGATGCAACAGTTAGAGAAGTCAAAATCTGCAAAGTTGGAGTTGGAGAGGCGAGAGGCAGAACTGAGAGCCaaaagggaggaagaggagaggaaacggcTGGAGGAGGCCCTGAGGGCTCGACAGGTGGAGGAACGCAAACGCTTGGAAGAAGAGGAGCTGGCACGGCAAAAACAGGAGGAGGCTTTAAGACGGCAGCGAGAGCAAGAAGAGGCACATCGCAGacaaaaagaggaagaggagagaatgAAACAAGAGGAAGCTCTGCGTAGATTAGAGGAGAGGcggagggaagaggaggagagaaagaaacggGAAGAGTTCCTTCGGAAACAGGAAGAGGAGCGCAGAAAGCAAGAGGAACTTGAAATATTAAGGAGGCGTGAGGAGGAGAAGCGAGCGGAAGAAGAGGCAACAGCTGCTGTGGCGGCAGCTGCTCTGGCCCAACAACAACTGGAGGAGcagaagaggagagagcaggAGGCCCAAAGACAGCAGGAGCTGCAGAGACAGAGGCAGCAGCAACAAGAGGCCCTCAGGAGActtcaacaacagcagcagcagcagcttgcaCACATGAAGCTTCCATCCTCTTCAAAGTGGGGCCAGCAGTCGGTCAACACTATAAACCAGACTCAGAGCACCCTGTCACTGGCTGAGATCCAGAAactggaagaggagagagaacgaCAGACGCAGGAGGAGCAGAGACGTCGGCAACAAGAGCTCCTGaagctacagcagcagcaggccttGCAACTGGCTCAGCAGCCCCAGGCCAAGCTGTCTGGTTGGGGTAGTGTGGCAAAACAGCCAGCTGCAACTAAATCTTTGCTGGAGATTCAAAGGGAAGAAGCCCAGCAGATGAAACAGCggaaggagcagcagcagcagcagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaaccgcagcagcagcagcagcagcagcaacaaccaCCTCACCCCATTGCCCCACAACAGATCCGTACTCAAAACAGAACTACATCGTCTCTGAGTAACTCGGTGTGGGGGTCTGTGAACACTAGCACCTGCACTAATTGGGGCTCAGACTCCAGCAGTATCTGGGGTGACACCCACAACTCTAACATGGGCTTCTGGGATGAAGCTGTGAAAGAGGCTGTCCAGCAACCTCCTCAAACCAAGAAAAGCAGCACGCAGAAGAACAACAAAGGCAACGCCAACATCagTAACTCTGTGAGTGGGCGGGCTAATAAAAAagtagaagaggaggagaagctgCTAAAGTTGTTTCAAGGGGTCAGTAAGAGCCAGCAAGACACCTTCATGCAATGGTGTGAGCAAACCCTGCACACCCTCAACACAGCCAACAATCTGGATGTTCCAACGTTTGCATCCTTCCTGAAAGAAGTGGACTCTCCATACGAGGTGCACGACTATGTCAGGGCTTATCTGGGGGACACTCCCGAGGCCAAGGACTTTGCCAAGCAGTTCCTGGAACGCCGTGCCAAACAGAACGCTAACCAACAGAAGCAGGCACCGCAGAAACAACAGCAACCCctcaagcagcagcagcagcagGATTCTGTATGGGGTGGAACGGGATCTTCGTCACTCTATCAGTCCAACCACACAAGTGGCCAGCAGCAGTGCTTTGAGACCGTCACCtcagggaaaaagaaaaagaagcagaagATGGTTCGTGCAGACCCAAGCCTTCTAGgctTTTCTGTGAATGCGTCATCTGAGAGATTGAATATGGGAGAGATTGAGACTTTGGAGGACTTTTAAGGGGCACTGCAGCCAAGCAAACCCAACTGACTGTATCCAATTTGAACAGCAGTCGTTTTACCCGAACCTCCTGCCACTTTCACCcttattttcagttttacatTTATCAGATGTCCTCTGGTAATCACTCATAAATTCCAATTTGTGAACAAACCATGATCTCTAAGGCAGGGTGTGTTTTCCATTTGCTTACGGACCTATAAACTGATGAAAACCCTCAAGACAAATGTACTGTAGAAAACTGGCCAGTGAAACATCCGACCAGCCAAGAGAGCAATCAGCAAATGAACTCAAGTTTCTGGAGAAAGTCTGCAGAGGTGTTTATGTATGTTGGGCATCAGCTACTTGGTTCCGAATCTTGTCCTGAAATTCAGTGACAACAAATTTCAAATTTGGCCTCCCATTATTTTAAGTGTGGATATATGGTTGGGGTGGTTGGGATATTATGGGACAGGTTAGAGAGAATATatccattgtttttgttttatttattaaatgttttcccATTACACTTTATTCCCCCCCTTCTCTTATCCCTCCCCGTTGTCTGCTGGGTGTTGATGGATAATGATGCAAGGTAAAGCCCAAGGATTCGTGCCCACTTATGTCCTGTTTTAAGGACATGTCAAAAGTTCCAAGTAGTTATCTATTTCTTGTATAATACTAGGCTGTTTAAAGAATAAACTTTCAATTCTGCATCTGTATTATAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158131 lncRNA upstream 14675 23856129 ~ 23856531 (+) True G117320
TU158126 lncRNA upstream 22260 23848687 ~ 23848946 (+) True G117315
TU158087 lncRNA upstream 125229 23742484 ~ 23745977 (+) True G117297
TU157998 lncRNA upstream 304889 23493106 ~ 23566317 (+) True G117228
TU157990 lncRNA upstream 397522 23472547 ~ 23473684 (+) True G117221
TU158159 lncRNA downstream 6275 23897243 ~ 23897646 (+) True G117344
TU158161 lncRNA downstream 7682 23898650 ~ 23898912 (+) True G117346
TU158170 lncRNA downstream 19554 23910522 ~ 23915931 (+) True G117355
TU158175 lncRNA downstream 25790 23916758 ~ 23920029 (+) True G117359
TU158177 lncRNA downstream 25790 23916758 ~ 23919254 (+) False G117359
XM_039815907.1 mRNA upstream 50765 23816040 ~ 23820441 (+) True glula
XM_039815090.1 mRNA upstream 189458 23603399 ~ 23681748 (+) False LOC120567964
XM_039815581.1 mRNA downstream 176 23891144 ~ 23896911 (+) True snorc
XM_039814875.1 mRNA downstream 8240 23899208 ~ 23905529 (+) True LOC120567818
XM_039814876.1 mRNA downstream 9172 23900140 ~ 23905529 (+) False LOC120567818
XM_039814878.1 mRNA downstream 21803 23912771 ~ 23914295 (+) False hes6
XM_039815142.1 mRNA downstream 72981 23963949 ~ 24005011 (+) True clcn2a
unassigned_transcript_561 other upstream 2881 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 16049 23850879 ~ 23855157 (+) True G117319
TU158062 other upstream 185402 23677079 ~ 23685804 (+) True LOC120567964
XR_005640697.1 other upstream 1192475 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 1258797 22608064 ~ 22612409 (+) False LOC120567968
TU158168 other downstream 14902 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 21696 23912664 ~ 23914498 (+) True hes6
TU158239 other downstream 131473 24022441 ~ 24023659 (+) True G117400
XR_005640839.1 other downstream 158796 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 158796 24049764 ~ 24054704 (+) False LOC120569114

Expression Profile