RNA id: XM_039815865.1


Basic Information

Item Value
RNA id XM_039815865.1
length 5775
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC120568373
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23212498 ~ 23302789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgagtgcaggCAGGCTGACAATGATTTCCTCAGTGATTACGTACAGAGCGAGTCCCTGCGGGGTAGGGGCCCCCTCTGGAGCCATCCTGATGGCTTTGGGGGCCTTGCTTCCATTTTCCATTATTATGTGGACTACCGGAGCGACAGCGCAGTCCAAGACCTTGCAGAAGACAATGTGACAGAGGACCAGCACAGTCCTGGGCAGACTGCCATTCCAAGCGATCCAGAGTGCGCCCTCGAGAGGGCGGCGGAGGATGGTGAGACCGGGCGTCTGAGGAAGAGGCTGCTCTCtccagaggaaggagaggagggagaggaggacgACGAGGAGCCTGCGCTGCACAGCTGCGACAGCTGCCGGCAGGTGTTCGAGTCGCTGAGCGATCTCACCGAACACAAGATTAATCAATGCCAGCTGACAGacgGTGGTGATCTTGAGGATGACCCATCATGTTCTTGGCCAGCATCATCTCCCTCCAGTAAGGATCAGACTTCTCCAGGACACTGCGAGGACTATGATTTTGGGGAGGATGAAGGGGGCCCTGGCCTGCCATACCCATGCCAGTTCTGTGACAAGTCCTTTAGCCGCTTAAGCTTCCTCAAGCGACACGAACAGAGCCACGGTGATAAACTACCTTTCAGCTGTACCTTTTGCAGTCGCTTGTTTAAGCACAAGCGCAGTCGAGATCGACACGTGAAGCTACACACCGGTGATAAGAAGTACCACTGCGGAGAGTGTGACTCTGCCTTTTCCCGCAGTGATCACCTCAAAATCCACATGAAAACTCACGCCTCTAACAAACCCCACAAGTGCCCTGTGTGCCGCCGAGGCTTCCTTTCCTCCAGCTCTCTCCACGGCCACATGCAAGTACACGAAAGGGGCAAAGACGGCAGCAGCTCAAGCCTTTCTAGATCTGATGAATGGAAGCTGAAAGAAACTCGCAAATGCAGTCGTTGTGAAGAGGGTTTTGATGTCCCAGAGGAGCTCCAGAGGCACATCGCCGAATGCCACCCTGAGTGCTCTCCATCAGAGGATGGAGGCCTGGGTGCCACCCTGCAGTGCATTTACTGCCATGAGCCCTTCAGTGACGAGGGTACCCTGCTGACCCACATTGACCAGGCCCACAGCCGAGACAGGAAGGGCCACACCTGTGCTATCTGCTCTGAgcactttctgtctgttgaGGACCTCTATGCTCACATGGACATCCACCAGCTCCCTGAATCtagtaaccatagcaacagccCTTCTTTGCTGACTGTGGGCTACACCTCTGTCTCTAGCACCACTCCTGACTCCAACATCTCTGTCGACAGCTCCACAATGGTGGAGACAGCACCACCTGTGCCCAAGACAAGGGGGAGGAGAAAGAGGGCTGCTCAGAACACATCAGACATGGGAGGACGTGCCTCCAAACAGCCTAAGGTCTCCTACAGTTGCATCTACTGCAACAAGCAAGTATTCTCCAGTTTGGCTGTGCTTCAAATTCACCTGCGAACCATGCATCTGGACAAGCCAGAGCAGGCTCATACTTGCCAGTTTTGTTTGGAGGTTCTGCCATCTTTATTAAATCTAAATGAACATCTTAAGCAGGTCCACAATGCAGAAGACCATGCTGCCCTGTTGGTCAGCTTGCCTGATGCCCTTCTTCAGTGTAACTTCTGCCCTGAGGTATTGAGTGACCTCAACGCACTCCAGGAACACATTCGCTGCTCCCACGGCTTTCCCAGTCCTGTGGCAAAGGAGAGCAATGCCTTCTTCTGCCCCCAATGCTTCATGGGGTTCTTGACAGAGGCTACCTTGGAGGAGCATGTTCGTCAGACTCACTGTGATGGGGGAAGCCTGCGCTTTGACTCTCCTCTGGCTGTAACACCCAAGGAGTCTATAGTAGAGGTGTACTCCTGTTCGTACTGCACCAATTCTCCCATATTCAACAGTGTTCTGAAGCTCAACAAGCACATCAAGGAGAATCACAAGAACATTCCACTGGCACTGAACTACATCAACAATGGGAAGAAATCCCTGCGCACTCTAAGCCCCTCTTCTCCAATATCTGTGGAACACACCATGCTGAAACAAGGTGGCTCAGCCTCACGCACTACCAGTGAGTTCATATGTAACCAGTGTGGAGCCAAGTATACCAGTCTAGACCTTTTCCAGACTCACCTAAAAACTCATCTGGATGGCCTGCAGCCTCAACTCACCTGCCCACAGTGCAACAAAGAGTTCCCCAACCAAGAGTCCCTGCTGAAGCATGTGACAATTCACTTTACTATTACCTCCACTTATTACATCTGTGAGAGCTGTGACAAGCAGTTCACTTCAGTGGATGACCTGCAGAAGCACCTACTTGACATGCATACCTTTGTTTTCTTTCGTTGCACTCTGTGTCAGGAGGTGTTTGACTCAAAGGTGTCTACCCAGCTCCACCTGGCTGTAAAGCACAGCAATGAGAAAAAGGTGTATCGCTGCACCTCCTGCAACTGGGACTTCAGGCATGAGACTGACCTACAGCTACATGTCAAACACAGCCATCTGGAAAACCAGGGCCGTGCCCACCGCTGCATTTTTTGTGGGGAGTCCTTTGGCACAGAGGTGGAGCTGCAGTGCCACATCACTACCCATAGCAAGAAGTATAACTGTCGCTTCTGCAGTAAGGCCTTCCATGCCATCGTCCTTTTGGAGAAGCATTTGAGGGAGAAACACTGTGTGTTTGAGGGAAAGGCACAGAACTGTGGTGCCAATGGCTCTACTGCAAGTGGTGGGGAAGGCCAACCTAAAGAAGATGCTGAGCTACATGGTCTCCTAACTAACAGTCATGGTACAGGGGCAGCAGTTGGACCTGTGGTGGAGTCTCAGAACAGCCATGACGGAAGTGAGGAAGAGGTGGACACTGCAGACCCCATGTATGGCTGTGACATCTGTGGGGCATCTTACACCATGGACTCACTCCTCACAAACCACCAGTTGAGGGACCACAATATACGCCCTGGTGAGAGTGCCATGATGAAAAGGAAAGCTGAAATGATCAAGGGCAACCACAAGTGCAATGTTTGCTCCCGCACCTTCTTCTCTGATGctgggctgagggaacatatgCAGACCCACCTTGGACCTGTCAAACACTATATGTGCCCCATCTGTGGGGAGCGCTTCCCTTCCTTGCTCACCCTGACTGAGCACAAGGTCACCCATAGCAAAAGTCTGGACACAGGCAGCTGTCGCATTTGTAAGATGCCACTGCATAGTGAGGAGGACTTCCTGGAGCATTGCCAGATGCACCCTGACCTGAGGAACTCCCTGACAGGTTTCCGCTGTGTTGTGTGCATGCAGACAGTCACCTCTACATTGGAGCTCAAGATCCATGGTACCTTCCACATGCAAAAGACAGGGACTATGTCCGGCAACCACCAACCCATGGGCCGCAGCAATATAATTTCTCATaatcagcagcaacaacatatccaaaaacctttCAAGTGCGCCTCATGCCTGAAAGATTTTCGGTCTAAACAAGACCTGGTAAAGCTGGACATCAACGGACTGCCTTACGGACTCTGTGCATCCTGCGTGACAGTAGCTGGCTCCAAGAGCTCCAGTCCAACAGTAAACGGAGGAAGGCAACAGCAGCATCATGGTGGAGCTACCACTCCAGCAACAACTACAGCCGCATGGATCCAAGGGGAGAGTCTTAGCCCTGGAGACGGGAAAGGCAAAGCTGTCTCTTCCTCATCTTCATCCTCTTCCACATCCTCATCAACCGCTGCCAAGACACGATGCTCCAGCTGTAATGTGAAGTTTGAGTCTGAAGCAGAGTTGCAAAACCATGTCCAGACAGTGCATCGGGAACAGGCTGGGGACAGCAACAGCGGGCAGCTCAAGACCCCCCAGATGTCCCCAATGCCCAGAGCCAGTCCCTCACAAACTGAAGAGAAGAAGACATACCAGTGCATCAAATGTCAGATGGTGTTCTACAGTGAATGGGACATCCAAGTCCATGTGGCCAACCACATGCTGGGCTCACAAGTATCTGGATCACATCACCAAATAGAGGAAGGATTGAACCATGAATGCAAGCTCTGTAGTCAGTCATTCGACTCACCAGCGAAGCTTCAATGCCACCTGATTGAGCACAGCTTTGAAGGCATGGGAGGAACCTTCAAGTGTCCAGTCTGCTTTACAGTATTTGTCCAGGCCAATAAGCTCCAGCAGCACATCTTCTCTGCACACGGCCAGGAGGATAAGATCTACGACTGCTCGCAGTGCCCACAGAAGTTCTTCTTCCAGACAGAGTTACAGAACCACGCGTTGACTCAGCACAGCAGCTAACGTGGCAAAGATCAGCGCCGTGGCCAAGAACAAGGATCACATGACGCAGAGAATAATGTCTGACCGCCAATTACCGTCAGTGCAGTTTCCCACTGACTGTCTTGCACTGAACTTTCGATTCAGTTTCACCACAAGGAACCATGCCAcagcaagaaaaaagaaaagcaaagcaaagaaaataaaaggaagAGGGGGAAAGAACATAAAAGAACCCTCTCCGTTCTTTACTAACcattatttcaaaaataaagaaaaagccaACTTGTTTGTACATAGGACTCTTCATGTGTTGCTTAACTACAGCTATATTGCAATCTTATGCAGTATTTGCCAATGTACAGTTCAAAATGTTTGtccaaaaaaagagaagaggaaaaaaatatattaatgacATTGTCAATCAGACCACATGGGACTCAACCCAGTTGTGTAAAGGAGAAACAGGGTGCCACTGAGAGCGTAGGAAGCTGTAGGAACCAGCAAGTGTTGTCAGGAGGACTCTTTTCATCAGCGCCACTCCCACTGCGCAGTATGTCACTCTGTGTCCTCACATGGTCAATCATTATGGGGTAGAAAAGCTTGATTCACCAGCATAGGCTGAGAtcttgtctgtgtgtccgtCGTAACATGGCTGCCAGAGGACCAGCTGGGAACGGCGGTGCGACTAATCTGCACTGCCTGTGCTGTAGTTCAGATGAGAggcaaaaaaagggggaaagaaagaaagaaaaacaacacagagaagagaaaaacaggACAGGATGCTGATATATGCAAACGCAGTGACACAGATTTGGAAAAGGCTAGTTCCTCTGGTTGGCTCGTGAACAGAGGCGTGAAGCTCCCATGTGGCTCTCAGAGCATGGGGAAATCTCCAGCCCACTGACTTAACCTGTACATTTCTGTTGTCAATGTTTACTGCTCGTTGAAGCCTGGAGATTactggaattttttttaatctttatgtTTTGTTATCCATACTTATTTTTTCGCAACGGGGGAGTAAATCCATTTGGATTTGTGGGTCATGAAGACTGAACATAATTTCAGTCTGTTTTGGGGATATACCGTAGTTACAAAACTCCATCCCTGGCTCTCCTGGAGAGTGCCCAAATACTCCTCTTGTTTCTTTGCAGTGTACCATTGCTCTCTGCTCAAGCTGGAAGCCACTGTGGCATCATAACTTTAAACCATTCTGTTATGTAAATGTTTTGCATTCATTGAACCTGAGATGCACTTTTGTATAAAACTttaatgttttgacattttgattGAGAATTGTTCGTACACAGTTTACAGGAAATCACCATCTCCTGCAGCAAAAGGACAGTTATCTCTGatgttattaaaatgtattgtacAAATATGGAGTTCTGTATTTGGCAGAcctcattttttttgtgttgcacATGTGATGGAAATATTAAAAACTGTATGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157860 lncRNA upstream 294392 22917876 ~ 22918106 (+) True G117128
TU157795 lncRNA upstream 458008 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 464766 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 739658 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 897551 22307767 ~ 22314947 (+) True LOC120568744
TU157944 lncRNA downstream 70921 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 74344 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 136782 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 143562 23446351 ~ 23462300 (+) True G117219
TU157987 lncRNA downstream 165831 23468620 ~ 23514085 (+) True G117220
XM_039815740.1 mRNA upstream 22927 23177741 ~ 23189571 (+) True ss18
XM_039815742.1 mRNA upstream 22927 23177743 ~ 23189571 (+) False ss18
XM_039815741.1 mRNA upstream 24360 23177741 ~ 23188138 (+) False ss18
XM_039816701.1 mRNA upstream 65081 23134261 ~ 23147417 (+) False LOC120568942
XM_039817027.1 mRNA downstream 22513 23325302 ~ 23343895 (+) True LOC120569134
XM_039817028.1 mRNA downstream 22514 23325303 ~ 23343895 (+) False LOC120569134
XM_039817029.1 mRNA downstream 22514 23325303 ~ 23343895 (+) False LOC120569134
XM_039816495.1 mRNA downstream 119927 23422716 ~ 23433374 (+) True vps4b
XM_039816496.1 mRNA downstream 122581 23425370 ~ 23433374 (+) False vps4b
XR_005640697.1 other upstream 533767 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 600089 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1315107 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2297210 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2836865 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 374290 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 548090 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 565465 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 603081 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 609875 23912664 ~ 23914498 (+) True hes6

Expression Profile