RNA id: XM_039816495.1


Basic Information

Item Value
RNA id XM_039816495.1
length 3326
RNA type mRNA
GC content 0.42
exon number 13
gene id vps4b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23422716 ~ 23433374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCACTGAGGGAGTGATAAGCAAACAGGAACTTGTTGTTCGGTGACATACGGCTGGGTAAACGAAACAAGACTGGCGGGGATCACGGGTCCtatctgttgtgtgtttttattctcaCAGGACTCCGCATGGAGCCAACAAATCTACAGAAAGCTATTGCCATAGCACAGAAGGCTTCACAGGAAGACCAGGCTGGGAACTATGAGGAGGCCATCCGCTCCTACCAACATGCTGTCAAGTACTTTCTGCACATTATAAAACGTGAACCCCAGGGTAAAGATGGCAACCAGAAGATAAGAGATACATGTAAACAGTACCTGGACAGAGCGGAAGAACTACAGGAGTACCTAGTGAATAAAGAGAAAGCCATTGATCTTGCCAGCAAGGCGGCTCAGGAGGATAAAGCTCAGAAATACGAGGAGGCTCTACGTCTTTACCAGGCTGCtgttcagtacttcctccatgTGGTGAAATATGAAGCCCAGAGTGACAAAGCTAAACAGAGCATCCGGGCAAAATGTGCAGAATATTTGGACAGAGCAGAGAAGTTGAAGGAGTAtttaaagaagaaagaaagcgcTCCTCCCGCGAAGCCTGTCAAAGAGTCACAGTCTGATGACAAAGGGAATGAAAGTGATGAAGGTGATGATCCAGAGAAAAAGAAGTTCCAAAATCAACTCTCAGGTGCAATTGTTATGGAGAAACCAAACATCAAATGGAATGATGTTGCTGGTTTAGAGGGAGCCAAGGAGGCACTAAAAGAAGCTGTTATTCTTCCGATCAAATTTCCCCACCTTTTCACAGGAAAGAGAACTCCATGGAGAGGGATCTTGCTCTTTGGACCACCAGGTACAGGAAAGTCTTATCTGGCTAAAGCTGTTGCTACAGAAGCAAATAACTCAACCTTCTTCTCCATCTCCTCTTCTGACCTCGTCTCCAAATGGCTGGGAGAGAGTGAAAAGTTGGTGAAGAATCTTTTTACCCTTGCAAGGGAGCACAAGCCTTCTATCATCTTCATTGATGAGATCGACTCCCTGTGTGGCTCAAGAAGTGAGAACGAGAGTGAGGCTGCTCGGCGTATTAAGACAGAGTTCCTGGTTCAGATGCAGGGTGTGGGAAATGACAATGAGGGAGTGCTGGTACTTGGGGCAACAAATATCCCATGGACCCTAGACTCAGCCATCAGAAGAAGATTTGAGAAGAGGATCTACATCCCGCTGCCTGAAGAGCACGCACGCTCCTTCATGTTCAAGCTCCATCTAGGCGCGACCCCCACAAGTCTCAGTGACACTGACTTTGTCACTCTGGGCAAGAAGACAGATGGATACTCGGGAGCAGATATCAGCATCATTGTCCGAGACGCTCTAATGCAGCCTGTTAGAAAGGTCCAGTCAGCAACCCACTTCAAAAAGGTACGTGGTGAATCAAGAACCGACCCCAACACTCTTGTAGATGACCTATTGACTCCTTGCTCTCCTGGCGATCCCAATGCGATTGAAATGACATGGATGGAGGTACCTGGGGAGAAGCTATTGGAACCTGTAGTATGCATGtCTGACATGATGAGGTCTCTGGCCAACACAAAGCCAACAGTCAATGATCAAGATCTGGTCAAACTGAAAAAATTCACAAATGACTTTGGACAGGAAGGCTAGGTGGGATGATTGAGCCAAAGCAAAGGAATTTTGATTGTCTGTCTTTACTGTccttgtcccttttttttctttttttactctcTCATCATAACCCTTCACCAGGCTTTGTGGTTTATCATGAGTGGACAAGATCACTGCGCTGTTGTTTTGCCAATTTGATAACCAAGCAAAGGGTGAAAGGACCTAGTTTTATTCGAAAAATAACCATTGTCCAAAGATTAAAAACTTCCCATCTGCAGCTGACCTGATAAAAGAATCAATGACATAAATAATTTAGAGTGTTGTTTGACTTGTGCACTATAGAATAAAAGGTATTTATCAGCAGAATACCCTAGCAACGAAATACACAACAATTAATTGCAAATAAGACTTTTGAAGTCAAgataatttattttaagttaaagcaacactatgtaacttttcccgcttcggtccccctacaggttgtctcattggaactacagcttgcGCTACCcgccgcttcggtcccccttcAGGTTGtctccatagactgtatattaatattaagtctatggttGTCTGATTGGAACTACAGCTAGCGCTACAcgccgcttcggtccccctacaggttgtttcattggaactacagctgcagctaaaagttacatagtgttgctttaagactAGCTCTTGTCTCCTTATTTTCCAGCCAGAATACATCTCACTAGACTAAAATATACCGCTTGCATATTCTCCATTTtatgttaagaaaaaaacaagcattttatAGTGTATAATGTACTTTGTGGAATATAAAAAGCTTGGGCTGGGGGAGTGAAGCAGGGCATGAGTTGATAGGATTTGTTTGGTGAAATatgtcatttttgtctcaagGTGGTGGACATttaagagctttgagacagaGATATTCAGGATGAGAGCTACATTAGACCCTGTGGAAATTTTGGATTGTTTATCCAGTTTCCTAACAAGGAACAATTGTATTTGTTTACTCATTTGTCATTTGAATTAAACTCGGCTACAAGGGTGGATCACCAATGGTGCCAGACCAGCATTATTTTACAATTCTTCAAGGACTCAATAGCTTTTAATTGCTTTGTCACTCAGctcatggttttttttttttctcacaaccTACTGTACATATTTTTCTTTACTATCCACAGGCTTTGCTGGTTATCTTTAatataaactgtaaaaaaaaaactaagccTTATGTTATGATAAAGTCATTATAAATTTTGATAAAACAAGACCCAGTTGGACACGGATGGCTCAGGTGGAGAGATCATCTTCTTGTATACTTAACAATATAGGAGTGCATCTCAAAGCATGAACTCTATGTTGCCATGATTGGCCGTGTGCACCATGTGCCTTCTAGAAAAGCTGCAAGATTcatttttattggtttatttctAAATTGGTCGCACTGCTTATATATCCAGTGCTTTGTCACTACAACTAAAATGTATAATTCATGTAAGCTCTTTCAGAGATTGTATACAACTGTGCTCTTTTGCTCCTAAGGTGTGAAAACTATCTCTTTTGAGTTTTAAGAGtcttattttactgtaaatgtctATACATATAGTCAACTCcagctttttctttgtgtggTCACCCATGcataacattttctgtttttgtttccacAATGTAAATAAAAGTTAAAGCTACGTCAAGAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157950 lncRNA upstream 44200 23377133 ~ 23378516 (+) True G117190
TU157944 lncRNA upstream 48517 23373710 ~ 23374199 (+) True G117187
TU157860 lncRNA upstream 504610 22917876 ~ 22918106 (+) True G117128
TU157795 lncRNA upstream 668226 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 674984 22747120 ~ 22747732 (+) True G117077
TU157982 lncRNA downstream 6197 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 12977 23446351 ~ 23462300 (+) True G117219
TU157987 lncRNA downstream 35246 23468620 ~ 23514085 (+) True G117220
TU157988 lncRNA downstream 35246 23468620 ~ 23519769 (+) False G117220
TU157990 lncRNA downstream 39173 23472547 ~ 23473684 (+) True G117221
XM_039817027.1 mRNA upstream 78821 23325302 ~ 23343895 (+) True LOC120569134
XM_039817028.1 mRNA upstream 78821 23325303 ~ 23343895 (+) False LOC120569134
XM_039817029.1 mRNA upstream 78821 23325303 ~ 23343895 (+) False LOC120569134
XM_039815861.1 mRNA upstream 119927 23212678 ~ 23302789 (+) False LOC120568373
XM_039815252.1 mRNA downstream 251 23433625 ~ 23440843 (+) True kdsr
XM_039815258.1 mRNA downstream 8217 23441591 ~ 23467811 (+) True bcl2b
XM_039815089.1 mRNA downstream 159358 23592732 ~ 23681748 (+) False LOC120567964
XM_039815088.1 mRNA downstream 159657 23593031 ~ 23681748 (+) False LOC120567964
XM_039815092.1 mRNA downstream 159766 23593140 ~ 23681748 (+) False LOC120567964
XR_005640697.1 other upstream 743985 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 810307 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1525325 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2507428 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 3047083 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 243705 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 417505 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 434880 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 472496 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 479290 23912664 ~ 23914498 (+) True hes6

Expression Profile