RNA id: TU168268


Basic Information

Item Value
RNA id TU168268
length 367
lncRNA type sense_over
GC content 0.51
exon number 1
gene id LOC120570507
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18818753 ~ 18827547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTAGTTCCCTTAGCCGCGCTAGCAGGCACGACCTTGCTTCGCAGAGCGATCTGCACACTGTTTATCTTTTCCAGCTACACCGAGGCTTCAGCGCGAGACTACAGATAGCCTTCTCTAATGTTTCCATGTAGTAACctagtcactgatatggtcataaccactacagtgctcaattagcctacctatttttgaggaggGATAAACTTCAAGTTTTCGTTGCGAAGGtgtgacctgtcctctggaggacatagccagaccacTTGGCGCTCACTGGATTGTTTTCGGGAGCTGGAGGCGACGAAAGCGGTGAGAAATCAGAAGCAAGGATGCCGGCCGGTCGGGCCTGCTAGCGCAGCTAAAACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168263 lncRNA upstream 10698 18815539 ~ 18816057 (+) True G125098
TU168058 lncRNA upstream 360935 18465586 ~ 18465820 (+) True G124976
TU168047 lncRNA upstream 372128 18442288 ~ 18454627 (+) True G124966
TU167992 lncRNA upstream 529135 18234042 ~ 18297620 (+) True G124924
XR_005640983.1 lncRNA upstream 534312 18291410 ~ 18292443 (+) True LOC120569814
TU168266 lncRNA downstream 739 18827860 ~ 18828360 (+) True G125101
TU168269 lncRNA downstream 1565 18828686 ~ 18828913 (+) True G125104
TU168274 lncRNA downstream 1812 18828933 ~ 18829526 (+) True G125109
TU168275 lncRNA downstream 2498 18829619 ~ 18829908 (+) True G125110
TU168279 lncRNA downstream 18286 18845407 ~ 18851795 (+) True G125114
XM_039818923.1 mRNA upstream 124203 18695106 ~ 18702552 (+) True dct
XM_039817076.1 mRNA upstream 149273 18675287 ~ 18677482 (+) True sox21b
XM_039818771.1 mRNA upstream 175088 18611360 ~ 18651667 (+) True LOC120570426
XM_039817056.1 mRNA downstream 100422 18927543 ~ 18931474 (+) True si:ch211-199f5.1
XM_039818300.1 mRNA downstream 104299 18931420 ~ 18935948 (+) True cnmd
XM_039818442.1 mRNA downstream 120798 18947919 ~ 18953681 (+) True LOC120570212
XM_039818438.1 mRNA downstream 129572 18956693 ~ 18962174 (+) False LOC120570209
XM_039818437.1 mRNA downstream 129572 18956693 ~ 18962174 (+) True LOC120570209
TU168229 other upstream 122227 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 809342 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 946029 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1347707 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1347707 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1665057 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2025968 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 2033031 20860152 ~ 20865442 (+) True G125757

Expression Profile