RNA id: XM_039817249.1


Basic Information

Item Value
RNA id XM_039817249.1
length 4271
RNA type mRNA
GC content 0.41
exon number 3
gene id trim13
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21793274 ~ 21809912 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTAAACAACCCGATGTCCAAAATTAAACACCTccaaaaaaacttgaaatatCAGTAGCAGTCGTGTTAGTGGCATTATAGCACACACTCCGATTCGCCTGTCTGCAAGTACGAACATATTAGTGTATTTAAATGATCTGTGCGCCACCGAAACGGTTAACTCTATACCCGGAAAGGGCGAAGTCTGCACAGCAACAAGCGCCATGATTGCGTTGCACTGTGCGTCTCAGCAGCTGGATACCATGGAGCAGCTAGAAGAGGAACTTACGTGCCCTATCTGCTGCGGTCTCTTCGAGGACCCGCGGGTTTTGCTGTGCTCACACAGCTTTTGCAAGAAGTGCTTGGAGGGACTCTTGGAGGGGAACCGAGGTCCATCTTACAGAACACCTTTCAAATGCCCCACATGCCGCAAAGAGACCCCTCACAACGGCGCGAACAGCCTGCAGATCAACTACTCTCTACGCGGAATAGTGGAGAAGTACAGCAAAATAAGGGTTATGCCTCAGCTGTCAATCTGTAAACAACACTATGGCCAGCCTCTAAACATATTTTGCGCCACGGACTTGAATCTAATTTGTGGGTTTTGCGCTACAACAGATGACCACAAAGGGCATACATTCTGCTCCTTTGAGGATGCATATGAACGAGAGAAGGAGGCGTTCGAGGAGCTGCTTCGCGGGTTGGAGAGCTGGCAGAGCGCAGATGTCCTGTCCTGCCTGGAGACACTACAAGCCAGTAAGAAAAAGGCGCTTCAGTCAGTGACCAAGGACGCAGAGAAGGTAACGGACTATTTCGACAAACTCATCAGTACCATTGAATGCAAAAAGAATGAGATCCTCTCGGATTTTGAAACACTGAAGCTGGTGGTGATGCAAGCATACGACCCGGAGATTGCCAAACTGAGCGCAGCGATGGAGGAGCATAGACGGGCGCTCAGCATCGCCGAGTCTGTCAAGAGCATCGCCGACCCCCTGTGCTTTCTGCAGCAGATGCAGGAGTTTCGGGAGAAGTTGAAAGTCCTTAAGGACACTCCACTGCCCTCTGGGAAAGACACGGACGTCGGTCCCCTTGTGCGCAATTTCGATGTTAAAAAGTGGGACTCGCTGAGGCTCCGAGAAGTGGACAAGATCGCAGTCCCCCACGAGAGTGGCTCCTACCGAACGGGGGGTTCACGGATGGCAGTGCCAAGATGGATCACCTTATTTATGAGCGTGTTACTGCCAACACTACTCCTGCTGCAGCCGCACAACCTTGCAGCCTACGTGCCCTCGCAGATTGAACCGCTTCTCACTGCCGTTTCCTCGCAGCTCACTCACACTGGTGTGTACCTGCGGGAAATGACTGACATGTACACAAGTTTAATGGGTGCAGGTCAGGAATGTATTGCTAACTTAATTGACTCTACGGTCAGTTTTATTGGCAGTTTTAATTACTAGCCTGTGGCATCTCTGCCATGCACTCACAGCTACAAATTGTGAACCAAGTGACCCATGAGGTGCTGGTTAAACTAATGACAGATATATCGCACCTGAATACATGTGGAAACACTTGTTTACCTAATTGTTTACCATGTCTTTTGTTATTGCCCAAGCCCCAACCTCAATGAAGCCATAGAATCAAATCAATCCATAATCCACGTTATATAAACGCTATCGATGTGCACAatctcctttctttttctttttttaaatacgtcATGACCAATGTATACCTATATCCAGGGTGATCTTGATAAATAAAACAAGTGTAGGCTAAGTCACTTTCAtgttccgttttttttttgtgcgaaATGCCAAATCAGCCAACTATTTAGAGATACAAGCGAGCCTGTGCACTAAGCAAGtgtaataaaaagaaatgaacGGTGTAATCGCTGGCCTCTTCCCTGCAGAGCGCGTCCGCACCACAGTGATGCTGCATCCTCTTCAAGGTTACAAACGTTGCATAACAGGGCCCGTGTGAAATATTCACCAGGCTGCAGACACGGtggaggagggaaaaaaaataaaaaaaactgtccatgATTAGGATGTTTTCACGAAACCctaaaactgacagctgtattTCCCCTATTACTGATAACAAAACGTAGGTAAGGGTACATGATTGTCAAGCGTGCTGGGaagtcattttatttctacacaaGATCTAGGCTATTTGCGGAGGTTCATGTGACTCATTCGTTGCATGACTTGTCCGGCCTATAAAGTCAAACATCTGAAGCCTGCTAAGTTACAGTCTATGCTCCGCTATGCATCTCAATTCAAAAATGCCATTGTGGGCAATTGGATGTTAttcaaataattttaaaatcagCGTAGCTCAGTGCGATTTTTGTCTTCTCACAAAAAGTCTTTATTAAAATAGGTCAGAGCAAAAGGACAAGCAGTGAACTGTGCATTGATCATTTAGCCTATTTATTTTCTGAGTAGAGctgcattttgaaaaaaaatttttttttaaataataatcctAAAGTCAGACCACAAAGTGAATCCGTGATGTCAGCACTGACCATAATTCAGGATGTACGTCATGTCAcgcatatacatatacatatatagccTTCTGTTGCCAGGCAAAGATAGGAACCAAATAAATGTAACCTACCCCTCTACATTAATATTTGAATTGCACGGCACGCAAATTTAAATATAGCCTGAAAAACGTTAACTCCAAtaaaattaagaaaaacatgtgaATGACTAAGGCTTCTGAAAAAGCCATTTACATCAAAGTTAGGCCTGCGGTGAGGGTTAATGCAAATAAACTTCAACATTAACAGGTGTAAGACAAAATGTGGAATTTCACGCCGTACATCATCAAGGCTGCTTCCACATTTTGATGTGCCGTTCTAAAGACGCAAAATAGTCAGACATaagacattacattttaaataggcTAACTGCACTTAATAATAGGATAACatcatttacaaaataaatgctTTTGAATTACGTTGACGTGGTTAAaattcactctcacacacacaaagttccATCTTGAAGCACTGAcattatataggcctatataaaaacaatGCAAGTATCATATAAACGCCTGTAATCTTTTAAATACAGGCTATAGGCTAATAGATTTGAAGGTTTctccattaaaataaaataaatgcaagcCTTAGCAGTAAAGAAGTAGGCTACTCCTAAAATGCGCACATATCTATTTTCTCTCCAATATAATTTTGCATAAATTTCACCTTTGCCAAATACCCTAATTCCGATTTTTTGCATTTGGAAAACAAATACGAGGATTCAGAATTCTCATCAAAAAGGCCTACAAGGCCAAATGGAAGAAAACTGCTGCAACATATATGCGTTTGTTCAGTGGGCAGAAAAATCCTAAAACTagctataaaaaaataaataaaatgaaccaTGAAAAACGTTATAATTAGGTCGcaggtttatttatttcatgcgTTTTTATTAAAACCAACATCTGATTCGTGCGACTTTTTTTTGTGGAGAAGTGTAATTAGTTTGTGATCCGATTTTGAGGATTTCTATTGTACCGCATACGTTCACATAAAGCCCGTGAtctaaaattatacaaaaaccAGATTTACCAACGAATGCCACATTATATCAAAGGCCTGTAAAACATTATGAATTTAGTCATTTTTATTATGTAAATCGGATTAGAGCCTTTGGTCATCGGACGTCCTGGTACAGCAGATGCACGTAAGGCGGTTACGTGCGCATCCGACACGACTTAAAATGGAGGTTTTTAGCCACGTTACGGGACACCATTTCATTTGTTACAGCATTGTAGCGAACATCAGAATATATCATTATTTTATCTCGACTTTATAAACTGAATGACTTGTTATATTTCAATGGTGTGTACACTACAGTCCAATATTTGTAATCATTGTAATCCGCAGCCAGTCTCTCTGTGTCACAGCTCGTGAACAGGCTGACATCCCAGGAGCTGCAGCGAGGCCACGCAGGCCATCTTGTGCATGATTTCTTCTTTGTGGATAACTGTACTATATAAAACCATGTAAGGGATTTTCAGTGTCAGCAAAACTTTTAGTATAACGTGAATAAAATACTAATATAAAGGTCAgcattctgttaaaaaaaaataaaaataaaaaactatagCATGTCATGTTCAAAACACATTACAGACAAAAAGgcaatttaaattttatttctcCAAGTGTGCAGAGGTGACAGTGAAATGTAAAAAGATTGTGTATACACATTTTAACTATTAAAGCAAGGCAGTGTTGGAGGTTAACTCAAAA

Function

GO: NA

KEGG:

id description
K12003 TRIM13; tripartite motif-containing protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 318140 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 318140 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 323415 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 324472 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 332033 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 545565 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 550632 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 580067 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 639866 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 729669 22535131 ~ 22537513 (+) True G126246
XM_039817470.1 mRNA upstream 44639 21743748 ~ 21755526 (+) True phf11
XM_039817463.1 mRNA upstream 57930 21700775 ~ 21742235 (+) False mcf2lb
XM_039818638.1 mRNA downstream 43189 21848651 ~ 21854501 (+) False rnaseh2b
XM_039818636.1 mRNA downstream 43192 21848654 ~ 21854501 (+) True rnaseh2b
XM_039818329.1 mRNA downstream 55798 21861260 ~ 21863025 (+) True LOC120570102
XM_039818510.1 mRNA downstream 78119 21883581 ~ 21885428 (+) True nr0b1
XM_039817744.1 mRNA downstream 421570 22227032 ~ 22268448 (+) True cmss1
XR_005641000.1 other upstream 111363 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 172713 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 934723 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 941255 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1278891 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 1001731 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 3061859 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3824645 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3834344 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 4311526 26116988 ~ 26129879 (+) True G127165

Expression Profile