RNA id: XM_039817790.1


Basic Information

Item Value
RNA id XM_039817790.1
length 5729
RNA type mRNA
GC content 0.55
exon number 32
gene id myo16
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20153855 ~ 20265590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGCTGTGTTCTCTAGCTGCAGTCTTATCAGAGCTGCCGGGGTGAATGTTTTGCTGCAGGACGTCAACGGAAACATTCCTCTGGACTATGCCTCCGAGGGAACTGAGACCAGCTACATCCTCCGAAAACACCTGGAGGAAAACGGTGTGGATGTGTCATCCATGCACTCCATGAAGACGCAGAGACCCAGCACGATGCTGTCTGACGTTAGACAGCTTGTAGCCACAGGGGGAAGTCTCAACCAGCCCAATGATGACGGTGTCACTCTGCTCCACATAGCATGCGCCAGTGGTTATAGAGaggttgtgtctgtgttgttggaGAGCGGTGCGGACCCTAATCCTGCTGACAACAACTTCTGGACCCCTCTTCACCTGGCTGCTAAATATGGACAGACAAGCATCGTTAGCCAGCTCCTGAGGCACAGAGCAAACCCGACTCTGTTGAACTGCAACCAAGACAAGCCCTCAGACATTTCTGCATCTGGGCCCATAGCTGATATGCTGCTGAATGCAGAGGAGAGCTGGCTGCAGAGACTAAAGGACCCCTCTGCTCCTCTACCCCCCACTGACCAACGCTATGATGGTGGTTTACACGACCTCAACACCCCTGTCAAGAACTTGAACCCCTTGGGGCTCTCTATCTCCAAGCGTGACAGTCTGCTGGAGAAGTGTGCCATGTTCAGAGAGGCAGGTGGAGCACTGAGCCGACAGCCCTTACAGGACAATGGCCTAGATGGCCCCTTTAGCTCTGGATCCAGCAAACTGGAGCAGGTTAAGCTGATGCCTCCAGCTCCCAATGACGACCTGGCATCCCTCAGTGAGCTGACCGACAGCAGCCTGCTCTACGAGATGCAGAAGCGCTTTGGCAACGACCAAATCTACACTTACATTGGACACATCCTTCTGCTGGTCAATCCAAACAAAGAGCTGCCCATCTACTCCACTTTGgttagtCAGTTGTACCTGAGCTCCACGGGTCGTCTGTGCTCCTCTCTGCCACCTCACATCTTCTCCTCAGCAGAAAGAGCTTACCACATGATGCTGCAGGAGAGACGACCACAGTGTTTCATCTTGAGTGGTGAAAGTGGTTCTGGGAAAACAGAGGCCTGTAAGCACATAGTGAGACACCTGACAGCCCGCTCCAGTCCCAAAGGCTTTGCACTGGAGCCCAGAATGAAACACGTTAACTGTATTCTGGAGGCCTTCGGTCATGCAAAGACTCTGAAGAACAACAACTCAAGCCGCTTTATCAAGCTGTTGACCATCCAATACTGTGACAAGCGGAGGACACTGCTCAGAGCCCGTGTATACGCCCACATGCTGGAGAAGTCTCGTCTGGTCCACCTGCCTCCTCACCAACACAGCTTCAGCATCTTCTATCTGATGGCTGAAGGTCTGTCGCCTGAGGAGAACAGCGCACTTTACTTCAACAATGTCCTGGCTCATAGGTATCTTAGTGGAGGACTCCCAGGGGAGAACCCACCAGTAGCTACGGCCTCCACCCAGAGCAGGGAACGCCTCGCAGCAGTCAAACAAGCCCTGCGAGCCTTGGGCTTTAACAAGCAGGAGGTGGATTCTGTGTTTATGCTGCTATCTGCTGTGCTCCATATTGGGGACCTACGTTTTACTGCATTGACAGATGCTGATACAGCCTTCCCTTCTGACCTGCAGCAGCTGGACAGAGTTGCTGGATTGTTGCAGGTGTGCTCCAATGACTTAAGCACTGCCCTCACCTCTGACGTCCAATACTTCAAAGGTGACATGATTACTCGGCGCCACACAGTGGAGATGTCAGAGCAGTACAGAGACCAGCTCGCGAAGGCAATCTATGGACGCCTCTTCAGCTATCTGGTCAACAATACCAACGACTACCTACAGGGACAGGACGACAGCATTGgtgatcctgccttggaaatTGGGATCTTGGATATCTTTGGGTTTGAAGAATTTCAGAGGAATGGATTTGAGCAGCTGTGCGTGAACATGACCAACGAGCGGCTGAGGCAGTACGTCTATGAGGTGCTATTCCAGCAGGAGCAAGATGAGTGTCTGCAGGAGGGCATCGCCATGGAGACCCCTCGCTCCCCCGGCAACCAGCCAGCCGTTCTGGATTTCTTTCTTCAGAAGCCTCAGGGACTGCTGTGCGTGTTAGATGAAGAGAGCCAGAGCCTGCGGCCATCGGAGCAGACCCTGTACAAGAGGCTGTCAACCCAGCTGGACTCCAATCCAACTCACGGTCTCTCTCTCACAACCAAGGATGGCAACGGAAACCCCACACCCAAAGACCAGGGCCCAGCCTTCACTGTCAGCCACTACGCCAGACAGATTTCATATGACCTCACAGGATCACTCACAAGAAACAAGGACTCTCTTCCTCAGAATCTCCTTTTCACGATGAAGTCCAGTGAGAGTGTGTTACTGCAGCAGCTCTTCCAGTCCAAGCTGACTCAGACTGGTTCTCTGGTGCCAGCAGCCCATAGCCGTGCCGGGCTGAGGGGGCCTAAAGCTGCCCTGTTGCTCCACAGGATGCCATCAGCCTCCCTTGTTACTGCCAACTCTCTCCCCCAACAGCCCCGGAGGTACCATGACCTTACCAAGATCTTGAAGAAAAAAGGCTCAAGCTCCTTCCTCCAAAGGCTAGAACGTTGTGGGCCCATCACTGTGGCTGTCCAGCAAAGGAACTCGCTGTCAGAAGTGATCAGTAAGCTGCAGGCTTGCACTCCTCACTTTGTGGAGTGTGTGCGCCCCAACGCCAGTGGTCAGCCAGACAGTTTTGACAGCTTTCATGTGTCTACCCAGCTGCAGTACATCGGGGTACTTGAGATGGTGCGCATGATCCGTTATGGATACCCTGTCCGCCTGTCCTTCCCGGGCTTCCTCAGCAGatATAAAGACCTTGTGGTCCCAACTTTGGGAGACAAGAAGAAATTGTCACCAGAAGAGAGATGCCGCTCAGTTCTGCAACAGGCCAAACTCCAGGgatggcagatgGGCAGCAGCAAAGTGTTTCTGAGATACTGGCAGGCAGACCAGCTCAACGACCGCTGCTACCAGCTTCATAAAAAGATCATCACCTGTCAGAAAGTGGTGCGTGGCTGGCTGGCCAGACAGCGTGTCCATCGCAGGCTGTCATTACAGCAGAAAGAGGAGTGCAGTGTGCAGCGTTTCCTGCAGGGGGCAGAAGACATGGGGCTGCGAACCTACGACCATTTAGTCATCCAAAATGCATCCGACATCGCACGAGAGAGCGACCGCCTGCGCTGTCATGGCAACAGCCTTCTCAACAACCTTGGCAACAGCCCACCACTTGGTGAGAGGCCTGAGCCGGTGGGCGAGGAAGAGGATCAGCCTGTCAGAAGGGTTGTGGAAAAAAGTGGGAAAATCTATGAGGGTCCTGTCAACGGGGGCAGTCGAGTTATTCGCCACTTTCGGTCTAGCTCGGTACCCATCCCCCTTGCTATGGACAACATGGTCCATTCCTCTGCCAGTCCATCCATCAAACCAGCCTTGCAGCAGGTAGCTCATGCCAACGAGGATGGCTTAGGCGGGGGAGGTCTTTCCTCTCCTCGTAAGCAACCTCCGCCCAAACCAAAGAGGGACCCCAACACTCGTCTGAGTGCATCTTATGAAGCAGTTAGCGCAGGGTTGACGATGGCAGCCAAAGAGAGCCCCACTCCAGAGGGCTATGGTTCGCCAGCTGGAAGCCCTCCTAAATCCCAGCTATCCCCCACAGACCCTGCAGCCTTGTCCAAGCCCCGTCCCCACAGTGATGACTACACAACCATGAGGAAGGTGCCACCCCCCAAACCTAAGCGCAGTCCCAACACTAAGCTCACAGGCTCGTATGAGGAGATCAATGCTGTAGCACCCCACATCCACCAGCTGCGTCCTGCTGATGTAAAGTTGGCCTTGCTGTCCCGTGCTGGGGGATTTGGAGGGTTTGGTAGTTTGATGCAGAAAGCAGCCTCTGTAGATGCCCCACAAGGGGTAGGCCTGAGCCTTTACCAGGGCCAAGACGAAGAGGACGTGTACATAGAGATGTTGGGCTCCCAGCCACGGGCTCGGAGCCTCCAGGAGCCTCCTGACAGCCCAGAGCTGGCTGACTCAGAGGCCGTCTATGAGGAAATGAAGTATTACCCTCATGAAGATGGTGCAATTCCTGCCTCTGTGGTTAGCAAGGCAGCCAAACTGGAGGCTCTCGGCTTGAGCCTGGTAGGATTAGGGGTATCTCCTCCTAAAAGCGGGGAGACGAAACAGATGGCAGCAGTGGTGACAGCTTCCATGGACATCACTAACTCACAGAGCACGTCCAACAGCGGAGCTCCCAAAACTCAGCATGGCAAAGATGGCAGCTGTGACATCCCTGCTCCCTTCCCCAACTTGCTGCCCCACCGTCCACCTCtcctggtgtttcccccctccccCGTCACCTGCTCTCCTGCTTCAGATGAGTCACCCCTCACCCCACTAGAGGTAAAGAAGTTGCCTGTGTTTGAGACTAACCTGAACTATGCTACTGGCCCAGACAGCCCACTGTCTCCACAGTATGCCCGCCAGAGGGCTGACTCCTCCCCTAGCCTCACTGTCCTCATGCCAGAGAAGAAGTCCACACCTCCACTcacccctccacctcctcccacCAATGCCCCACCTCCTCCCTACAGACCTCCTTCACACTTCCCCTTCCCGCCTGAGGCTAACCTCCTGACTCTGACCCGCGCAGCATCTGTCACAGGGAGCTCAGACTCCCCCAAAACCTCATCCTCTCAAAGGGTAAGCGGGGAACCACTGGGGAAGCCACCTCCCTACTCCCCAGTAAAGATGTCTCGTCCTGAGCCTCGGCGAGCACACTCGTGTTCTTCATCTCCCCTGCTCTTCAACCCAGCCAATGGCAGACCCCTGACCAGCCCCCTGGATGAGCTCAACACTCTGTTCAGTTCTGGACGCAGCCTGCTGAGGAAGTCCACCTCTGGCCGTAAGATGAGAGATGGAGGATTCAATTCTAATATCAATCTGCCAGGAAGGGAAGAATGCGGCTCTGCCCCCACCTCACCATCTCTGCAGCTACAGGACAAGAACGCCAACAACCACACACATCCTCACTCCTCAAGCCCCGCCCCCGTAGAGAACGGCAACCAGATCTCCAATGGGTCGCTGGAGGATGAGAGTCACAGCAAGTCAAACTCCTCCAGCTCCACCTCTCTTCACAGACACATGGACAGCCATCATACTCAGGTGTTCCAGCGGTTACGTCTGTCTAACGGGGATCAGAGTGCCGCCCTTGGGGAGCTTCTGCGAGGGCGGCATGTGCAGTGTGAGGGGCGGGGTACCTGGAAGCACCGTCCACCTCAGTCCCCACCCCTGCCTCCCACACTGCTCTGGACCAACAGGAAGGCCTCTCCATGACAGAGGTTGTGTGATGCAGACACATGTATTGGTTGTGAAgttcctccctctccttctcttcagCCACACTCgcgcatttttttcaaagtggacCAAGTAACCTCAAAGCCCAGGGGCTAGGTGAAAGCTCCAAGCTCCAAAGCGTGAGCCTTGTCCCTGGGCTGAAGGTCCTGCCTTTGCGCCTTTGACCTTGACTGTGGAGGATTCCCCAACCTATGTGATAAAAGCTCAGCACTGTGTGATGCTGACAAGTGTtttctatgaaaaaaaaaaaaatgtgtgaaacTATAGAGGTCCATGGGGAGCTGTTTTTTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168817 lncRNA upstream 171743 20024263 ~ 20027981 (+) False G125504
TU168818 lncRNA upstream 171743 20024263 ~ 20027981 (+) True G125504
TU168814 lncRNA upstream 183470 20016021 ~ 20016254 (+) True G125501
TU168804 lncRNA upstream 206567 19992364 ~ 19993157 (+) False LOC120569357
TU168793 lncRNA upstream 256877 19942230 ~ 19942847 (+) True G125482
TU168897 lncRNA downstream 64797 20330387 ~ 20330659 (+) True G125577
TU168965 lncRNA downstream 226071 20491661 ~ 20492121 (+) False G125626
TU168968 lncRNA downstream 226071 20491661 ~ 20492159 (+) True G125626
TU168966 lncRNA downstream 226098 20491688 ~ 20492121 (+) False G125626
TU168967 lncRNA downstream 226098 20491688 ~ 20492159 (+) False G125626
XM_039819092.1 mRNA upstream 50674 20145083 ~ 20149050 (+) True tnfsf13b
XM_039818622.1 mRNA upstream 57225 20137304 ~ 20142499 (+) False abhd13
XM_039818623.1 mRNA upstream 57225 20137304 ~ 20142499 (+) False abhd13
XM_039818624.1 mRNA upstream 57225 20137553 ~ 20142499 (+) True abhd13
XM_039817229.1 mRNA upstream 206400 19968360 ~ 19993324 (+) True LOC120569357
XM_039818301.1 mRNA downstream 123928 20389518 ~ 20471524 (+) True col4a2
XM_039818592.1 mRNA downstream 213121 20478711 ~ 20485061 (+) False naxd
XM_039818596.1 mRNA downstream 213123 20478713 ~ 20485061 (+) False naxd
XM_039818593.1 mRNA downstream 213125 20478715 ~ 20485061 (+) False naxd
XM_039818594.1 mRNA downstream 213128 20478718 ~ 20485061 (+) False naxd
TU168229 other upstream 1495196 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2182311 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 2318998 17860160 ~ 17880726 (+) False hoxd10a
TU168970 other downstream 226588 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 587499 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 594562 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 1353758 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 1389541 21655131 ~ 21688802 (+) False LOC120569986

Expression Profile