RNA id: XR_005641000.1


Basic Information

Item Value
RNA id XR_005641000.1
length 4291
RNA type transcript
GC content 0.52
exon number 32
gene id LOC120569986
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21655126 ~ 21691804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAATATACTCAAGAGGTGAGGAAAAACCCCAGTGCGCATGCGCCGCGTAGTCATCTGACGGGTGAGCGGCTGTGGACGTTTTGCGTTGCCGCTACATCGACGGCCACCGCTGTAAAACAGAGCGGGACACACAGACAGCCTCCAGGAGGGGCCGTCtcctgcaagaaaaaaaaaacaaaacagtttaACAAACGAGGAGTAACCAGGAAGACTATCCAGAGAGGTTTGGAGGTTTGCATGCGGTGAAATTTCTTCTGAAATGTAGCCAGCAGCGTGAGTGTGGGTTATTGTAATCGCTTGGTCGCTGCATGGCTCTTCACAGGGATGCCATGGAAATCAGAACAGCCGACTGAGAGACCGCTGCTCCTCGCTATCACAGACACGGCGGCGGTGGCGGTGGCGGAGGTGGTGAACGATGGATACTGGTGAAAAGATCCACGTTAGGTAGCGTTTACGAAGATCCGAGGAGAGCTGAACGTCTCTGTTGCACAGTTTACTCGCCGCCAGAGCTGTCTGAAGGATGGATTTCACCCAGCTCCGGAACATCATCAGCAGATACtgTGTAGGGGAGGAGATCTGGGTGGACAGTCGGACGGTGTACATCGGGCATAAAGAACCTCCTCCGGGAGCTGAGGCCAACATCCCTCAGCGTTACCCCGACAACCGCATCGTCTCCTCCAAGTATACCTTCTGGAACTTCATTCCCAAGAATTTGTTTGAGCAGTTCAGAAGAATCGCTAACTTCTACTTCTTGGTCATATTTCTGGTGCAGCTTATCATCGACACCCCCACCAGCCCAGTCACCAGCGGCCTGCCCCTCTTCTTTGTAATCACTGTCACTGCAATAAAACAgGGCTATGAGGACTGGCTCAGACACAAGGCTGACTGCTCTATAAACGAGTGTCCGGTTGACGTGGTGCAGCAGGGGAAGGTGGTGAGGACACAAAGTCACAAGCTACGGGTGGGGGACATTGTCGTGGTGAGGGAGGACGAGACTTTCCCCTGTGACCTCATCCTGCTCTCTTCCAGCCGCCATGATGGGACCTGCTATGTTACCACAGCCAGCCTGGATGGGGAGTCCAGTCACAAGACCTATTATGCTGTACAAGATACCATGGCCTTTAGAACGGAGCAGGAGGTGGATTCGCTACATGCCACTATTGAATGTGAACAACCACAGCCTGACCTCTACAAaTTTGTGGGACGCATCAATATTTACAAGGACAAAGAAGAGCCTGTTGCTAGACCTCTTGGGGCTGAGAATTTGCTCCTTAGAGGAGCCACACTGAAGAACACACAACATATTTATGCTGTTGCAGTCTACACTGGTATGGAGACTAAGATGGCGCTTAATTACCAGTCTAAATCTCAGAAGCGCTCTGCTGTAGAAAAGTCAATGAATGCCTTTCTGATAGTGTATCTGTGCATCTTGATCAGTAAAGCGGTGATCAACACTGTTCTGAAATATGCTTGGCAGTGGTCTCCAGACAGAGACGAGCCCTGGTACAACCACAGGACCGAGAACGAGCGCCAGCGCCACATGGTGATCCGAGCATTCACAGACTTCCTGGCCTTCATGGTCTTGTTCAATTACATCATCCCAGTGTCTATGTACGTGACGGTGGAGATGCAGAAATTCCTGGGCTCCTATTTCATCACCTGGGATGAGGAAATGTTTGATGAAGAGCTGGGAGAGGGTGCTCAGGTCAACACCTCTGACCTGAATGAAGAGCTGGGACAGGTGGAGTATGTGTTTACTGATAAGACAGGCACTCTCACTGAGAACAACATGGAGTTTATTGAATGCTGCGTTGATGGGAATGTCTACATCCCGCATGCCATCTGCAACGGCCAAATCCTCAGTGCTGCCTCCAGTATAGACATGATTGACTCCTCACCTGGAGGATACAGGAGAGAACACGAGGATCTGTTTTTCCGGGCGCTGTGTCTGTGTCACACGGTGcaggtgaaggaggaggagacagtGGATGGCATCAAGAGGGGCATCCACCAGGGCAGGCCCACCTCCTTCTACATCTCCTCCTCACCGGATGAGGTTGCTTTGGTGGAGGGAATGAAAAGGCTGGGTTACACCTATCTGAGACTGAAAGACAACTACATGGAGATCCTCAACAAAGACGATGAGATTGAAAGGTTTGAGCTGCTCCATGTACTAAACTTTGACTCTGTCAGGAGGAGAATGAGCGTCATAGTCAAGACAAGCTCAGGCGAATACCTGCTGTTTTGTAAGGGGGCAGACTCGTCCATTTTTCCTCGGGTAGTATCTGGGAAGGTGGAGCAGGTTAAAGCCCGGGTGGAACAGAATGCTATAGAGGGGCTGCGTACTCTGTGCGTTGCTTATCGAAGGCTGTCAGAGTCCGAATACCAGGAGGCATGTCATCACCTGAACGAAGCCAAGCTAGCCCTGCAGGACAGGGAGCAGAGGCTGGCGCAGGCCTATGACATCATTGAGAGGGACTTGGTGCTTTTGGGTGCTACGGCAGTGGAGGACAGGCTCCAGGAGAAAGCTGCAGACACCATTGAGTCACTGCACAAGGCTGGGATGAAAGTCTGGGTCCTGACAGGGGACAAGATGGAGACGGCAGCAGCTACCTGCTATGCCAGCAAGCTGTTCCGTCGCAGCACCCAAATCCTGGAGCTGACCAAGAAACGCACAGAAGAGCAGAGTCTGCATGATGTTCTGTTCGAACTGAACAGGACGGTTCTCAGACAACGCTCTATTTCTGGGTTGTCGGTAGACTGCCTCGACTTTGGCCTGATCATCGACGGGGCCACTCTGTCAGCGGTACTAAAGGCCAACCAGGAGCGTGCCGGTTCAGGCAATTACAGAGAGATCTTTCTTGAGATCTGTCGCAACTGTAGCGCTGTGCTCTGCTGTCGCATGGCACCACTCCAGAAAGCACAGATTGTGAAGCTAATTAAAGCTTCTAAAGAGCACCCCATAACCCTCGCTATCGGCGATGGGGCCAACGATGTCAGCATGATCTTGGAAGCGCATGTGGGCATTGGCATCATGGGTAAAGAGGGCCGACAGGCGGCAAGGAACAGTGACTATGCCATCCCGAAGTTTAAACACCTGAAGAAGATGCTACTCGTTCATGGCCACTATTATTACATCCGAATTGCTGAACTTGTTCAGTACTTCTTCTACAAGaatgTATGCTTCATCTTCCCTCAGTTCCTCTACCAGTTCTTCTGCGGGTTCTCCCAGCAGCCTCTGTACGACACCGCCTATTTGACGTTGTACAACATCAGCTTCACCTCGCTCCCCATCCTCCTCTACAGCCTGGTTGAGCAGCACATCACCATGGAGACGCTCAAGAGGGACCCATCCTTGTACAGGGACATAGCGAAGAACTCCCTCCTTCGCTGGCCTGTCTTCCTGTATTGGACGTGCCTGGGTGTGTTTGATGCTGTTATCTTCTTCTTTGGTGCCTACTTCCTGTTTGACAACACCACCTTCACCAGCAATGGCCAGCTTATGACCACCAACACACAGATGATGTTTGGGAACTGGACCTTCGGGACTCTCGTCTTTACTGTGCTGGTGTTCACCGTTACGCTCAAGCTTGCCTTGGACACACACCACTGGACCTGGATCAATCACTTTGTCATCTGGGGGTCACTTCTTTTCTATgttattttctctcttctctgggGAGGCATCATTTGGCCCTTCCTGAACTACCAGAGGATGTACTATGTGTTCATGCAGATGCTGTCTAGTGGTCCGGCCTGGCTCAGCATCATCCTGCTCATAACGGTCAGCTTGCTGCCAGATGTCATCAAGAAGGTCCTCTGCAGGACCATATGTCCTACAGCCACCGAACGTGCACAGTCCAATCGCCCGTGCCTTACTGTGGAGCCATCCACCATCTTCATGCTTTCTCAGTCCTCCAGCAGAATGAGTTTCTGATTGGCCcagagagacgagagaggagCAGGAACAGGAGAAGGTAAGGACAGCGAGGGCCCTGGAGGGCTGTGTGGCTCCTGGCACTGCTGGTGGAGGGGGAAGCAATGAGAGGAACCCACTCCACCCTGATAGGACCTGTGAGGGAGACAGTGCAGAAAAAGCTGCTAGGACCTATGACTCCATGATGTCACACAGCCACATCACCCCTCTCAGCAAACCCTAGAGTACACCCCGCTAGGTGGGCTAGGGTCACCATGGATCATGAGAAGCTGTCGTGGGATGGCGTGGCCAAGTTGACTCCACTATCCTCTCGTCGATCCCTCAAAGACACAAGCACGGACTCCTCTCAAC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 173106 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 173106 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 178381 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 179438 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 186999 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 662225 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 667292 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 696727 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 756526 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 846329 22535131 ~ 22537513 (+) True G126246
XM_039819002.1 mRNA upstream 20374 21619349 ~ 21634757 (+) False sox1a
XM_039819003.1 mRNA upstream 27679 21619348 ~ 21627452 (+) True sox1a
XM_039818280.1 mRNA upstream 105096 21518502 ~ 21550035 (+) True arhgef7a
XM_039818279.1 mRNA upstream 105096 21518503 ~ 21550035 (+) False arhgef7a
XM_039818351.1 mRNA upstream 183463 21468365 ~ 21471668 (+) True mrpl30
XM_039817461.1 mRNA downstream 3419 21692221 ~ 21742235 (+) True mcf2lb
XM_039817464.1 mRNA downstream 3419 21692221 ~ 21742235 (+) False mcf2lb
XM_039817458.1 mRNA downstream 11972 21700774 ~ 21742235 (+) False mcf2lb
XM_039817459.1 mRNA downstream 11972 21700774 ~ 21742235 (+) False mcf2lb
XM_039817465.1 mRNA downstream 11972 21700774 ~ 21742235 (+) False mcf2lb
XR_005641085.1 other upstream 27679 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 789689 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 796221 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1133857 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 1389893 20174828 ~ 20265238 (+) False myo16
TU169945 other downstream 1118391 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 3178519 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3941305 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3951004 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 4428186 26116988 ~ 26129879 (+) True G127165

Expression Profile