RNA id: XM_039818622.1


Basic Information

Item Value
RNA id XM_039818622.1
length 2102
RNA type mRNA
GC content 0.45
exon number 2
gene id abhd13
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20137304 ~ 20142499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaagaaaagcccAACGCGGAAGTCGTGAAGGCTACGCTagtaatgctaatgctaaccaGCTGTGTAGTTATCCTCGCCGGTTCTTGCTGACAGTAATTCACTTTGCGTTCTCACCAGTTAACTTTCACTCTAATTTACTTAGCTGCTACAAAGCTGCGTGACTGTGCCGTATATGTGTTCCTGTTTTGTGAAATATTCATGCAGGTGAGGCGCTAAAAATGAGAGAAGGAGTGTGTGTCCTGTGACTCAGCTCTTGTGTAGCCATGGAGAAGCCCTGGAGGTTGTGGGGGGCAGTGGAGCGTTGTACCCTGACTCTGGCCTCCTGGTCTTGGGGTGCATGCCGAGTCTCCCTTTTGGCTCTCATCCTCACCTTCCACCTGTATGGCGGATTCTTCCTCCTAGCTCTTATCCTAGCCTCTGTGGCAGGCATCCTCTACAAATTTCAGGATGTGCTCCTCTACTTCCCTGACCAGCCCTCCTCCTCTCGCCTTTATGTTCCCATGCCAACAGGAATCCCTCATGAAAATGTGAACATTCGCACCAAGGACGGTGTAAAGCTTAACCTCATCCTGCTTCGCTACACAGGAGGCGACACACCTCCTGGAGTCACCCCTAGCAATCAAAGCAGCCCCACTTCCTCTGCTCCACCTACAATCCTATATTTCCATGGTAATGCAGGTAATATTGGTCACAGGGTGCCAAACGCCCTGCTCATGCTGGTCAATCTAAAAACCAACGTGGTGCTGGTGGACTACCGTGGCTATGGAAAAAGTGAGGGTGAGCCCAGTGAGGATGGGCTGTACCTGGATGCAGAAGCCACGCTGGACTATGTCATGACCCGTCCTGATCTGGACAAGACAAAGGTGGTACTATTTGGCCGCTCACTGGGGGGTGCTGTGGCTGTGCGCTTAGCATCAGTCAACCCTCACCGTGTAGCAGCCATTATTGTTGAAAACACCTTCCTCAGCATCCCCCACATGGCAGCGACACTCTTCTCCTTCTTGCCAATGCGCCTGCTGCCTTTGTGGTGCTATAGGAATCAGTTCCTGTCCTATCGACAGGTGGCGCTGTGCCGCATGCCCTCGCTGTTTGTGTCTGGTCTGTCGGACCAGCTCATCCCACCTGTCATGATGAAACAACTGTATGAGCTGTCTCCTGCGCGGACTAAACGCCTGGCTATCTTTCCAGAGggcacacacaatgacacatgGCAGTGTCAAGGCTACTTTGCGGCTTTGGAGCAGTTTATAAAAGACCTGCTGAAGAGCCACGCCCATGAGGAGAGTGCCCAGCCCTCATCTAGTGTCACCattatctgaaataaaaagtcatggacTGATTGTTGACTACAGGTTGTGGGCTGGAGGAAGTGAAGGCTGTCATGGGAAACTGATTGGATGGacttaattgatttttttttttttttttttttttagaaagaatgtaaaaaaaatatatatatataaaaatgtttttctctgggtttctattttatttaactCTTTCTACCTTTCTGTAAATGTAACATTTGTTCAAATGATTTGACTATTTCATGGTTTGAAGAGCGAGTAACAATGCCCTTCTTTTGTTTTAGAGCTATGAATGCATGTATTTATGACCTTAAATGACTGAAGCCAAGATCATACATGCCCACGCTGcaatcacaaaatatttactgtaatgGGTCATTGGGTCTACAGAAATTAATTTAAATCACTGAAACAATTGCTCATCACATACTGACCATATGAGGACCTACAATATTACAGTGAAAACTGATTACTACTGGAATTCAAATTAAACTTCTTCTGATATAGAAAATGAGACACTGATAATATCTaggcctatactgtatatatctttgCTAATACATATCATTGCACTTTCTTTTGTTCAGATTTACCCAAGTGTTGAGTTATGTATGCTAACCTCTTCTGAGCAATACTTTGAGGAGAACAAGgatgtgtttttttcctctcccttttTGGTGAGGAACATGGTGAGTCCTTGCAGCAGCATGACATGACatgattttaatatttatatatacccttaaaaattgtgtctggcaCATAGCATTAAACACTTGTCGAATAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168817 lncRNA upstream 109323 20024263 ~ 20027981 (+) False G125504
TU168818 lncRNA upstream 109323 20024263 ~ 20027981 (+) True G125504
TU168814 lncRNA upstream 121050 20016021 ~ 20016254 (+) True G125501
TU168804 lncRNA upstream 144147 19992364 ~ 19993157 (+) False LOC120569357
TU168793 lncRNA upstream 194457 19942230 ~ 19942847 (+) True G125482
TU168867 lncRNA downstream 86229 20228728 ~ 20269128 (+) True G125547
TU168897 lncRNA downstream 187888 20330387 ~ 20330659 (+) True G125577
TU168965 lncRNA downstream 349162 20491661 ~ 20492121 (+) False G125626
TU168968 lncRNA downstream 349162 20491661 ~ 20492159 (+) True G125626
TU168966 lncRNA downstream 349189 20491688 ~ 20492121 (+) False G125626
XM_039817229.1 mRNA upstream 143980 19968360 ~ 19993324 (+) True LOC120569357
XM_039817228.1 mRNA upstream 184106 19944868 ~ 19953198 (+) True si:ch73-390b10.2
XM_039817407.1 mRNA upstream 208358 19924998 ~ 19928946 (+) True si:ch211-214p13.8
XM_039817408.1 mRNA upstream 208358 19924998 ~ 19928946 (+) False si:ch211-214p13.8
XM_039819006.1 mRNA upstream 216884 19916095 ~ 19920420 (+) False si:ch211-214p13.9
XM_039819092.1 mRNA downstream 2584 20145083 ~ 20149050 (+) True tnfsf13b
XM_039817789.1 mRNA downstream 11356 20153855 ~ 20265590 (+) False myo16
XM_039817787.1 mRNA downstream 12325 20154824 ~ 20265590 (+) False myo16
XM_039817788.1 mRNA downstream 20207 20162706 ~ 20265590 (+) False myo16
XM_039817786.1 mRNA downstream 32328 20174827 ~ 20265590 (+) False myo16
TU168229 other upstream 1432776 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2119891 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 2256578 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 32329 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 32329 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 349679 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 710590 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 717653 20860152 ~ 20865442 (+) True G125757

Expression Profile